Pairwise Alignments

Query, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 548 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  487 bits (1253), Expect = e-142
 Identities = 265/558 (47%), Positives = 369/558 (66%), Gaps = 40/558 (7%)

Query: 18  VLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLDRKTS 77
           +L V+NL+  F    G    V+++S+ +   ET+AI+GESGSGKSV+S +IM L+D    
Sbjct: 5   LLEVRNLSVEFHTAAGVVHAVKSISYHLDKGETLAILGESGSGKSVSSSAIMNLIDMPPG 64

Query: 78  RIE-GKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEALTVHQD 136
           RI  G+++L GRDLL +P EE R+V G+ ++MIFQ+P++ LNP++ +G QI+EA+T H  
Sbjct: 65  RISSGEILLDGRDLLTMPAEERREVNGRRVAMIFQDPLSHLNPVYSVGWQISEAMTTH-G 123

Query: 137 ISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLIADEPT 196
           ++ S A+ E +RLL +V IP        YPH+FSGG RQRVMIAMALA +P LLIADEPT
Sbjct: 124 LAGSKAREEALRLLRRVGIPEPERAMRKYPHEFSGGQRQRVMIAMALALRPDLLIADEPT 183

Query: 197 TALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETGTTDDI 256
           TALDVT+Q ++L L+K+LQ E GM+VL ITHD+GVV+E+ADR +VM +G +VE GT  +I
Sbjct: 184 TALDVTVQAEVLKLLKELQRETGMAVLIITHDLGVVSEIADRVVVMEKGAIVEAGTVREI 243

Query: 257 FHRGQHPYTRALLSAVPKLGSMRSRLLPARFPIIDIKTGESPPVVETKDTVSGGKTPILS 316
           +   QHPYT+ L++A P  G+M      A                           P+LS
Sbjct: 244 YKNPQHPYTQKLIAAAPGKGAMHEPGARAE--------------------------PLLS 277

Query: 317 VKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITRLIE 376
           V+D+   +           G+  A++ +SFDL  GET+++VGESG GKST  R++ RL E
Sbjct: 278 VRDVRKTY-----------GSFEALKGISFDLMPGETMAVVGESGSGKSTLARALLRLDE 326

Query: 377 PTSGNVTLDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIMEPFMEH-RLG 435
           P SG     G ++  L    L  +RR +QMVFQDP  SL+PRM+V   I E ++ H  + 
Sbjct: 327 PDSGTALWKGRDLFALSPAELYKLRRDLQMVFQDPTQSLNPRMTVYQLISEAWVIHPDIL 386

Query: 436 QKAQAREKAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIVADEAVSAL 495
            KA+ RE+ A+LL +VGLS + M R+PH+FSGGQRQRIAIAR+L L+P++I+ DEAVSAL
Sbjct: 387 PKAKWRERVAELLVQVGLSAEHMSRYPHQFSGGQRQRIAIARALALEPQLIICDEAVSAL 446

Query: 496 DVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDN 555
           DVS++AQV  LL  L++ + +AF+FI+HD+ VV   +  V VM  GE+VE+G    VFD 
Sbjct: 447 DVSVQAQVIELLDRLRREMGIAFIFIAHDLPVVRDFADYVMVMQQGEVVELGTVREVFDT 506

Query: 556 PQHPYTKKLMSAVPVPDP 573
           P+  YT+ L++A   PDP
Sbjct: 507 PRQAYTRALLAASLSPDP 524



 Score =  199 bits (507), Expect = 2e-55
 Identities = 112/265 (42%), Positives = 170/265 (64%), Gaps = 10/265 (3%)

Query: 7   SMEQTGGSVSPVLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSL 66
           +M + G    P+LSV+++  ++    G    ++ +SFD+ P ET+A+VGESGSGKS  + 
Sbjct: 264 AMHEPGARAEPLLSVRDVRKTY----GSFEALKGISFDLMPGETMAVVGESGSGKSTLAR 319

Query: 67  SIMRLLDRKTSRIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQ 126
           +++RL D   S   G  +  GRDL AL   E+ K+R +D+ M+FQ+P  SLNP   + + 
Sbjct: 320 ALLRL-DEPDS---GTALWKGRDLFALSPAELYKLR-RDLQMVFQDPTQSLNPRMTVYQL 374

Query: 127 IAEALTVHQDISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASK 186
           I+EA  +H DI   A   E +  L  V++  +A     YPHQFSGG RQR+ IA ALA +
Sbjct: 375 ISEAWVIHPDILPKAKWRERVAEL-LVQVGLSAEHMSRYPHQFSGGQRQRIAIARALALE 433

Query: 187 PKLLIADEPTTALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGD 246
           P+L+I DE  +ALDV++Q Q+++L+ +L+ E G++ +FI HD+ VV + AD  +VM +G+
Sbjct: 434 PQLIICDEAVSALDVSVQAQVIELLDRLRREMGIAFIFIAHDLPVVRDFADYVMVMQQGE 493

Query: 247 VVETGTTDDIFHRGQHPYTRALLSA 271
           VVE GT  ++F   +  YTRALL+A
Sbjct: 494 VVELGTVREVFDTPRQAYTRALLAA 518