Pairwise Alignments

Query, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 546 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  473 bits (1218), Expect = e-138
 Identities = 258/556 (46%), Positives = 359/556 (64%), Gaps = 26/556 (4%)

Query: 18  VLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLDRKTS 77
           +L V++LT  F   GG       +SF +   ET+ I+GESGSGKSV++ +IM L+D    
Sbjct: 6   LLEVKDLTVDFLSLGGAFRATSGVSFHVDAGETLVILGESGSGKSVSASAIMGLIDTPPG 65

Query: 78  RI-EGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEALTVHQD 136
            I  G V   GRDL +L E E R + G+ I+MIFQ+P++ LNP++ IG Q+ E  TVH  
Sbjct: 66  DICAGSVAYRGRDLSSLSEGERRDLNGRRIAMIFQDPLSHLNPVYTIGWQLEEVFTVHGV 125

Query: 137 ISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLIADEPT 196
            S + A+   I +L +V IP    R   YPHQFSGG RQR+MI MA+A +P++LIADEPT
Sbjct: 126 ASGAEARQRAIEILGRVGIPEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPEILIADEPT 185

Query: 197 TALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETGTTDDI 256
           TALDV++Q QIL+L+K+LQ E+G++++ ITHD+ V A +ADR IVM  G +VE G    +
Sbjct: 186 TALDVSVQAQILELLKKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIVEEGEARAV 245

Query: 257 FHRGQHPYTRALLSAVPKLGSMRSRLLPARFPIIDIKTGESPPVVETKDTVSGGKTPILS 316
           F    H YTR L++A+P     R+   PAR                       GK PIL 
Sbjct: 246 FENPAHSYTRTLINALPHADD-RAPPRPAR---------------------PAGK-PILE 282

Query: 317 VKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITRLIE 376
           VK++   + + SG F  K   +HAV+ +SFD+A GET+ +VGESG GKST  R +  L E
Sbjct: 283 VKNIDKFYTLSSGFFA-KPARLHAVKNLSFDVAAGETIGIVGESGSGKSTVARVLLGLNE 341

Query: 377 PTSGNVTLDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIMEPFMEHR-LG 435
            + G     G +VLK+DR  L   RR VQMVFQDP++S++PRM+V   + EP+  H+ + 
Sbjct: 342 ASGGEALFHGRDVLKMDRKQLLAFRRKVQMVFQDPYSSMNPRMTVFDIVSEPWRIHKDIL 401

Query: 436 QKAQAREKAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIVADEAVSAL 495
           +K + R++  +LL  VGL+P+  KR+PH+FSGGQRQRIAIAR+L  DP+++V DEAVSAL
Sbjct: 402 EKTRWRDRVTELLGLVGLNPEHAKRYPHQFSGGQRQRIAIARALACDPELVVCDEAVSAL 461

Query: 496 DVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDN 555
           DVS++ QV +LL +L+  L LA++FI+HD+ +V   + R+ VM  GEIVE      +F N
Sbjct: 462 DVSVQVQVIDLLAELRDRLGLAYIFITHDLPIVRHFADRIIVMKSGEIVEHATTEEIFRN 521

Query: 556 PQHPYTKKLMSAVPVP 571
           PQH YT++L++A P P
Sbjct: 522 PQHAYTRQLINATPKP 537



 Score =  186 bits (471), Expect = 3e-51
 Identities = 110/268 (41%), Positives = 160/268 (59%), Gaps = 17/268 (6%)

Query: 314 ILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITR 373
           +L VKDLT  F    G F   SG       VSF +  GETL ++GESG GKS +  +I  
Sbjct: 6   LLEVKDLTVDFLSLGGAFRATSG-------VSFHVDAGETLVILGESGSGKSVSASAIMG 58

Query: 374 LIEPT-----SGNVTLDGYEVLKLDRTTLRTMR-RSVQMVFQDPFASLDPRMSVGTAIME 427
           LI+       +G+V   G ++  L     R +  R + M+FQDP + L+P  ++G  + E
Sbjct: 59  LIDTPPGDICAGSVAYRGRDLSSLSEGERRDLNGRRIAMIFQDPLSHLNPVYTIGWQLEE 118

Query: 428 PFMEHRLGQKAQAREKAADLLEKVGLSPDMMKR---FPHEFSGGQRQRIAIARSLMLDPK 484
            F  H +   A+AR++A ++L +VG+ P+  KR   +PH+FSGGQRQRI I  ++ L P+
Sbjct: 119 VFTVHGVASGAEARQRAIEILGRVGI-PEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPE 177

Query: 485 VIVADEAVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIV 544
           +++ADE  +ALDVS++AQ+  LL  LQ    LA + I+HD+ V   ++ RV VM  G IV
Sbjct: 178 ILIADEPTTALDVSVQAQILELLKKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIV 237

Query: 545 EIGPRAAVFDNPQHPYTKKLMSAVPVPD 572
           E G   AVF+NP H YT+ L++A+P  D
Sbjct: 238 EEGEARAVFENPAHSYTRTLINALPHAD 265