Pairwise Alignments

Query, 249 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  190 bits (482), Expect = 6e-53
 Identities = 109/233 (46%), Positives = 153/233 (65%), Gaps = 12/233 (5%)

Query: 19  ALDSVSVDVAEGESFGIVGESGSGKSTLLRAIAGLNHFDEGSLMVAGRSYS--SKHRDKS 76
           A+  +S+++ +GE+ GIVGESGSGKSTL RA+ GL     G +   G+ +   S+ +  +
Sbjct: 302 AVKGISLELKQGETLGIVGESGSGKSTLGRALIGLLP-STGQIAFKGQDFRALSEKQRLA 360

Query: 77  FYSDVQMVFQDPYGSLHPRQTVDALLLEPLVIHGLD----NREQRIARALDEVGLGSGFR 132
              D+QMVFQDPYGSL PR TV  ++ E L++H        R QR  RAL+EV L     
Sbjct: 361 LKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVRLDPNSI 420

Query: 133 FRYSHQLSGGQRQRIAIARALIVEPKILLLDEPTSALDASIQAEILNLLEQARKDRNLTF 192
            RY H+ SGGQRQRIAIARALI+EP  +LLDEPTSALD S+Q  ++ LL++ +K RN+ +
Sbjct: 421 NRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGY 480

Query: 193 VMVSHDLGVISHMCDRLAVMKSGKVVEMLEAGALES--REFTADYTRQLLVAS 243
           + +SHDL V+  + DR+ VM+ G+V   +E G+ ES       +YT++L+ AS
Sbjct: 481 LFISHDLAVVKALSDRVLVMQKGQV---MEQGSAESIFHNPQHEYTKKLIAAS 530



 Score =  135 bits (339), Expect = 2e-36
 Identities = 94/256 (36%), Positives = 140/256 (54%), Gaps = 22/256 (8%)

Query: 4   VLSIRDMVVDF---DGYI-ALDSVSVDVAEGESFGIVGESGSGKSTLLRAIAGL-----N 54
           +L +R++ V F   DG + A+ +VS D+  GE+  IVGESGSGKS    A+  L      
Sbjct: 6   LLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNAR 65

Query: 55  HFDEGSLMVAGRSYSSKH--RDKSFYSD-VQMVFQDPYGSLHPRQTVDALLLEPLVIHGL 111
              E S+M  G    +K   + +    D + M+FQ+P  SL+P   V   + E +  H  
Sbjct: 66  IHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHRN 125

Query: 112 DNREQRIARALDEVGL-----GSGFRFRYSHQLSGGQRQRIAIARALIVEPKILLLDEPT 166
            ++ Q   R L+   L       G   ++ H+ SGGQ QRI IA ALI EP IL+ DEPT
Sbjct: 126 VSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEPT 185

Query: 167 SALDASIQAEILNLLEQARKDRNLTFVMVSHDLGVISHMCDRLAVMKSGKVVEMLEAGAL 226
           +ALD ++QAE+L L+++ + +  +  + ++HDLGV+  + DR+ VM  G VVE    G+ 
Sbjct: 186 TALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQ---GST 242

Query: 227 ES--REFTADYTRQLL 240
           E    +   DYTR L+
Sbjct: 243 EQLFLQPEHDYTRMLI 258