Pairwise Alignments

Query, 278 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  216 bits (551), Expect = 7e-61
 Identities = 122/257 (47%), Positives = 165/257 (64%), Gaps = 3/257 (1%)

Query: 5   LLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPK-SA 62
           +L ++NL V F           GVS T+ R E L +VGESGSGKS T  AI+ L PK SA
Sbjct: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64

Query: 63  RIEADTLRFGDIDLLKASAKERRIMRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEK 122
              + ++ FGD+D L+ S +  R +RG R+ MI Q+P  SLNP+  IG+Q++ETL  H  
Sbjct: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124

Query: 123 IGSGEARQRTLAMLEAVQIRDPERVFDLYPHEVSGGMGQRVMIAMMLVCGPELLIADEPT 182
           + +  A Q+ +  L  V IR PE   + YPHE+SGG  QRVMIAM L+  PELLIADEPT
Sbjct: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184

Query: 183 SALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELSSANL 242
           +ALDV+VQ ++LD+L  L ++ GM ++F++HDL +V    DRV VM +G++VE  +   L
Sbjct: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244

Query: 243 KEA-KHPYTQGLLNCLP 258
             A  HPYTQ L+N  P
Sbjct: 245 FAAPAHPYTQQLINADP 261



 Score =  164 bits (416), Expect = 3e-45
 Identities = 108/264 (40%), Positives = 149/264 (56%), Gaps = 18/264 (6%)

Query: 1   MSAP-LLTVENLRVSFPTRTGL-------VEAVRGVSFTLGR-ERLGIVGESGSGKSQTG 51
           M AP LL  E LRV FP + G        ++AV  +SFTL + + LG+VGESGSGKS TG
Sbjct: 270 MDAPTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTG 329

Query: 52  RAIMGLTPKSARIEADTLRFGDIDLLKASAKERRIMRGKRMAMILQDPKYSLNPVMTIGR 111
            AI+ L      I     RF   DL     +E    R K M ++ QDP  +LNP M++ +
Sbjct: 330 MAILKLLASQGAI-----RFAGQDLQALKRREMLPYRSK-MQVVFQDPYSALNPRMSVAQ 383

Query: 112 QIMETLRTHEKIGSGEARQRTLAMLEAVQIRDPERVFDLYPHEVSGGMGQRVMIAMMLVC 171
            I E LR H ++   E      A+++ V +    R    YP+E SGG  QR+ IA  LV 
Sbjct: 384 VIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTR--HRYPNEFSGGQRQRIAIARALVL 441

Query: 172 GPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAG 231
            PE ++ DEPTS+LD TVQ +VLD+L  L +   +  +F+SHDL ++ + C   +VM AG
Sbjct: 442 KPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAG 501

Query: 232 KVVEELSSANLKE-AKHPYTQGLL 254
           ++VE   + +L E   HPYTQ L+
Sbjct: 502 EIVEHGETQSLFENPSHPYTQQLV 525