Pairwise Alignments

Query, 545 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  135 bits (341), Expect = 3e-36
 Identities = 131/504 (25%), Positives = 228/504 (45%), Gaps = 39/504 (7%)

Query: 18  LSLMMLSAPHAFAATPADTLVEGFAIDDIITLDPGEAFELSAAEVTGNTYSKLVSIDLND 77
           L+L +++A  +F A  AD  V   A  D +++DP E       +++   +  L+      
Sbjct: 8   LALALIAAGLSFGAMAADITVAYDA--DPVSMDPHEQLSGGTLQLSHMVFDPLIRF---- 61

Query: 78  TSKVIGD--LAESWTTSEDGLTYTFKLKSGLKFASGNPITADDVAFSFERAVKLDKSPAF 135
           T K+  +  LAESW    D  T  F L+ G+KF SGN  TADDV ++F R   L +S  F
Sbjct: 62  TQKMEFEPRLAESWQRV-DNETMRFTLRKGVKFHSGNDFTADDVVWTFNR---LKESADF 117

Query: 136 LLTQFGLKG--DNVNEKAKAADANTFVLTVDKPYAPSFVLNVLTATVAAVVDKKLITEKA 193
                  KG  + +    K  D      T++   A ++ L    AT    +D K  T   
Sbjct: 118 -------KGIFEPLVSLTKVDD-----YTIEIKTAGTYPLIENVATYIFPMDSKFYTGTT 165

Query: 194 KSVTPSADYKYDTDFGNEFLKTGYAGSGPYKILGWKANEAVILEANPNYYGEKPK--LKR 251
                 A+       GN F     +G+GP+ +   +    +  + NPNY+ +  K  + +
Sbjct: 166 ADGKNKAEI---VKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDK 222

Query: 252 VVYRHMKESSGQRLALENGDIDVARNLEPGDMEAVSKKEGLAVTSAPKGTVYYFSLNQK- 310
           +    +KE + +  AL +G +D+   + P D + +   +G+ + + P   V  F +NQ  
Sbjct: 223 LTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNS 282

Query: 311 NENLKKPEVVEALKYLVDYDAIGATIIKGIGEVHQTFLPKGQLGALDENPYKLDVAKAKE 370
           N  LK   V +A+ Y ++ + I   ++KG         P G  G  +    + D+ KAKE
Sbjct: 283 NPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPRFDLNKAKE 342

Query: 371 LLAKAGLKDGFTVTMDVRNTQPVTG--IAESVQQTLAQAGIKLEIIPGDGKQTLTKYRAR 428
           L+ +AG + GF +TM   N + V    IA++    L++ GIK+++      Q   ++   
Sbjct: 343 LMKEAGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKC 402

Query: 429 THDIYIGQWGSDYFDPNSNAETFTINYD-NSDEGKNKTLAWRNAWDVPDLTKETQSALLE 487
             D+ +  W  D  D  +  E  T+  D N+ +G+     + NA    ++ K   +A  E
Sbjct: 403 AADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNA----EVDKLVNAANEE 458

Query: 488 KDTAKRAAIYQNLQKEVLAKGPFV 511
            D  KR+ + + +++ +  +  FV
Sbjct: 459 TDLEKRSTMLKKVEEILYNEAAFV 482