Pairwise Alignments

Query, 259 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 282 a.a., ABC spermidine/putrescine transporter, inner membrane subunit from Pseudomonas fluorescens FW300-N2E2

 Score =  127 bits (319), Expect = 3e-34
 Identities = 82/270 (30%), Positives = 139/270 (51%), Gaps = 19/270 (7%)

Query: 3   RQLFIPLTLLLVVGFLIG--------PFLIIVAASFSAGDTLAFPPQGFSLKWIAKVF-- 52
           RQ  +P      VG L G        P L ++  SFS    L FPP  +SL+W    +  
Sbjct: 8   RQSLLPGETGRAVGLLSGFILLLAVLPILTMIVMSFSGAANLDFPPSSYSLQWYRAAWHT 67

Query: 53  -------TVESFRESFAMSMFLAIGGTFTALILGIPASYAMSRYKLPFAETVRTIVSAPI 105
                   V S  ++   S+ +A      A ++ +PA+YA++R +         ++S P+
Sbjct: 68  FVSPDASDVLSLGQAMGTSLLVACLTMIFATLIAVPAAYALTRCEFRGKAVALQLMSLPL 127

Query: 106 IVPGIIVGLALLRYF-VVPFGIGITLALFLAHTALILPYAVRVVSASLNNLRSDIEEAAV 164
           + P +++GLALL  F  +PF +  T  L +AH  L LP+ V+  +A++  + S++EEAA 
Sbjct: 128 VFPMVVLGLALLLVFDSLPFQM-TTSRLVIAHVILALPFVVKNCTAAMLGIGSEVEEAAR 186

Query: 165 LLGSSRLGAFFRVVLPNIRGGILSAFILGFVTSFNQVPVSLFLSGPGVRTLPIDMLGYME 224
           +LG++   A   VV+P ++ GIL+  +L F+ SFN+  V+ FL    V T+PI M     
Sbjct: 187 MLGATPRRAIVDVVVPLMKSGILAGMLLAFIVSFNEFTVTYFLYTIDVMTVPIWMYSRTV 246

Query: 225 IVFDPSVAALSSLLAFLSIGIVFMAERFLG 254
              DP+V + + L+  +   +++  E+ +G
Sbjct: 247 SSLDPTVFSFAVLIVLIDFVLIWALEKLVG 276