Pairwise Alignments

Query, 275 a.a., spermidine/putrescine ABC transporter permease from Agrobacterium fabrum C58

Subject, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

 Score =  150 bits (379), Expect = 3e-41
 Identities = 89/239 (37%), Positives = 137/239 (57%), Gaps = 8/239 (3%)

Query: 24  LVPVFMLLSEGFRTTDGWTLSAYAAFFS------DPLNQTVFLRTLKLGALVTVVSAVVG 77
           L+P  M++   F T D   L  +A  F       DPL   V L +  +  + T++  V+G
Sbjct: 25  LIPNLMIIGTSFLTRDEANLIKFAFTFENYTRLLDPLYGKVMLHSFYMAIVATLICLVIG 84

Query: 78  YAAAFAIINLSPGKKGHVVNLVVLPLMISPVARTYAWIVILGRTGIVNQALQAVGLSDAP 137
           Y  A+ +  +    +  ++ L+++P   + + RTY   ++LG  GI+NQAL ++GL DAP
Sbjct: 85  YPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRTYGLKIVLGTQGILNQALMSLGLIDAP 144

Query: 138 IRILFSETAVFIGLLQLFLPLMIISLISALENMPKDTIAAARVLGANWFQVFWKVILPLT 197
           +RI+F+ETAV IGL+ + LP MI+ L SA+E +    I AAR LGAN FQ   +VILPLT
Sbjct: 145 LRIMFTETAVMIGLVYILLPFMILPLYSAIEKLDGTYIEAARDLGANKFQTLVRVILPLT 204

Query: 198 KEGLVVGGTLVFTGSLTAYITPAILGGSKVLMLETLLYQQVTVSNN--FVAASVIAFIL 254
             G++ G  LV   +L  +    +LGG+K L++  ++  QV  + +  F AA+ IA  L
Sbjct: 205 MPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIGNVIKSQVLNARDWPFGAATSIALTL 263