Pairwise Alignments

Query, 306 a.a., LysR family transcriptional regulator from Agrobacterium fabrum C58

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  170 bits (430), Expect = 4e-47
 Identities = 101/291 (34%), Positives = 162/291 (55%), Gaps = 4/291 (1%)

Query: 4   LSRKLLPSTSALAAFDSVARLGSFSAAADELALTQGAISRQVMSLEEQLGVRLFERGARG 63
           +SR+L P  +A+ AF++ AR  SF+ AA+EL +TQ A+S Q+ +LE+ LG++LF R  R 
Sbjct: 1   MSRRL-PPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRS 59

Query: 64  VSLTTEGSAYAKSIAAALGEIRSASLQIMTKTHGNTLNLAMLPTFGTRWLLPRIPDFVAN 123
           + LT EG +Y   I     ++  A+ +++ ++   +L ++M P+F  +WL+PR+  F   
Sbjct: 60  LLLTEEGQSYFLDIKDIFTQLSDATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEK 119

Query: 124 HPEITINFATRIGQFDFEREQLDMAIHIGQADWPGAESTFLMHEMVAPVCSPQFLSAH-P 182
           +P+I +       +     + +D+AI+ GQ  WPG  +  L +E++ PVCSP  L+ H P
Sbjct: 120 NPDIDVRIKAVDSEEGSLTDDVDVAIYYGQGSWPGLRADKLRNEVLIPVCSPMLLNGHKP 179

Query: 183 VEKGEDIAALPLLHMASRPGAWGHWFESLGLS-LALPQGMRFEQFSSVAQACIAGLGVAL 241
           +E   D+    LLH  SR   W  WF   G++ + + QG  F   S V QA   G GVAL
Sbjct: 180 LETPADLKHHTLLHDMSRHD-WQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQGVAL 238

Query: 242 MPLFLIDNELKSKQLVKAFDHQARSPSSYYAVAPLSRANHAPVVLFRDWLV 292
               L   ++K+ +LV  F     S  +YY V   + A    +V FR+W++
Sbjct: 239 GYSVLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWML 289