Pairwise Alignments

Query, 434 a.a., bacteriocin ABC transporter permease from Agrobacterium fabrum C58

Subject, 454 a.a., HlyD family secretion protein from Pseudomonas fluorescens FW300-N1B4

 Score =  176 bits (447), Expect = 1e-48
 Identities = 112/407 (27%), Positives = 202/407 (49%), Gaps = 16/407 (3%)

Query: 32  WAVGTEIVGAVIAQGSLVVETSLKKVQHPVGGVVSELMVRDGDRVKAGDVVMRIDATMTR 91
           WA    +      +G  +  + ++ +Q+  GG+V+E+ VR+G  V  GD ++R+D T   
Sbjct: 58  WAKFAVLQEVTTGEGKAIPSSKIQVIQNLEGGIVTEIFVREGQMVNKGDTLLRLDDTRFL 117

Query: 92  ANLAIVVKSLDQFTARKARLEGERDRAASVVFPQSLRDRAGDAEVLA----MMNAEQRLY 147
           +N           TA+  RL  E +       P  L      AEV+A    +   E+ LY
Sbjct: 118 SNKGESEADRYALTAQVERLSAEAEGR-----PFKL-----SAEVIAKAPQVAEDERSLY 167

Query: 148 EDRRAVRESKKRQLEQRVRQLRDEISGLEAERAANVREQGMVDEELIRFRSLQERGLLDK 207
           E R+    S++R L +++RQ   E++   +++        ++ +E+     L   G +  
Sbjct: 168 EQRQRRLASEQRTLTEQLRQKTQELAEFRSKQGQFSSSLALLQQEMNMSAPLVGTGAVSP 227

Query: 208 SRLSTLERQATDIDGDIGRLRAGIAGIEAKISETALQILQIDEQWSEEVGSDLREMDARI 267
             +  L+R A +I G +      I   E+ I+E   +I + ++ +  +   +L E    +
Sbjct: 228 VEILRLKRSAVEIRGSLNATTLAIPRAESAINEIKSKIDESEQSFRSDAAKELNEKRTDL 287

Query: 268 GEYVERRVAAEDQLKRVDILAPQDGVVHQLAVHTVGGVIAPGEQIMMIVPEVDKLVVEAK 327
            +     +A +D++ R  +++P  G++  L V+T+GGV+ PG  ++ IVP  D L++EAK
Sbjct: 288 SKITATSIAIDDRVTRTTVVSPVHGIIKMLKVNTIGGVVQPGNDMVEIVPLEDNLLIEAK 347

Query: 328 VAPQDIDQIYFGQVTNLRFSAFNQKTTPEITGTVERISADVTVDQRTGASYYLVRVATSQ 387
           V PQD+  ++ GQ   ++FSA++      ++  +E I AD   D + G S+YL++V T +
Sbjct: 348 VRPQDVAFLHPGQKAMVKFSAYDYTIYGGLSAKLELIGADTITDDK-GNSFYLIQVRTDK 406

Query: 388 EQI-KRLGEFSLMPGMPVEAFITTGERSVLSYFLKPLLDQANRTFRQ 433
             +   +    ++PGM     I TGE+SVL Y LKP+L       R+
Sbjct: 407 NHLGGDVKPLLIIPGMVATVDIITGEKSVLDYLLKPVLKARTEAMRE 453