Pairwise Alignments

Query, 434 a.a., bacteriocin ABC transporter permease from Agrobacterium fabrum C58

Subject, 455 a.a., Type I secretion system, membrane fusion protein LapC from Pseudomonas fluorescens FW300-N1B4

 Score =  154 bits (390), Expect = 4e-42
 Identities = 114/410 (27%), Positives = 205/410 (50%), Gaps = 18/410 (4%)

Query: 20  LGFLTLTGVFGGWAVGTEIVGAVIAQGSLVVETSLKKVQHPVGGVVSELMVRDGDRVKAG 79
           +GF     ++  +AV  E+       G  +  + ++K+Q+  GG+VSEL V +G  V+AG
Sbjct: 49  IGFFVFLMLWANFAVIDEVTKG---DGKAIPSSKIQKIQNLEGGIVSELFVTEGQIVEAG 105

Query: 80  DVVMRIDATMTRANLAIVVKSLDQFTARKARLEGERDRAASVVFP----QSLRDRAGDAE 135
             ++R+D T   +N+            R  RL  E D    + FP    +++  +A   E
Sbjct: 106 APLIRLDDTRFASNVGETEADRLSMLLRVERLSAEVDDRP-LNFPADVLKAVPTQAASEE 164

Query: 136 VLAMMNAEQRLYEDRRAVRESKKRQLEQRVRQLRDEISGLEAERAANVREQGMVDEELIR 195
            L  ++  Q+LY++   ++E    QL QR ++LR+  S     R A   ++    +E+  
Sbjct: 165 SL-YISRRQQLYDEIGGLKE----QLIQRQQELREFTSKQSQYRNALSLQR----QEINM 215

Query: 196 FRSLQERGLLDKSRLSTLERQATDIDGDIGRLRAGIAGIEAKISETALQILQIDEQWSEE 255
              L  +G +    +  L+R   +  G +      I   E+ I E   +I +   ++  E
Sbjct: 216 SEPLVAQGAVSPVEVLRLKRAEVETRGQLDATTLAIPRAESAIKEVQRKIDETRGKFRSE 275

Query: 256 VGSDLREMDARIGEYVERRVAAEDQLKRVDILAPQDGVVHQLAVHTVGGVIAPGEQIMMI 315
             + L E    + +      A ED++ R  + +P  G+V++L V+T+GGVI PG  ++ I
Sbjct: 276 ALTQLNEARTDLNKAQATGKALEDRVSRTLVTSPVRGIVNKLLVNTIGGVIQPGSDLVEI 335

Query: 316 VPEVDKLVVEAKVAPQDIDQIYFGQVTNLRFSAFNQKTTPEITGTVERISADVTVDQRTG 375
           VP  D L+VEAK+ PQDI  ++ GQ   ++F+A++      +   +E+I AD   D+   
Sbjct: 336 VPLDDTLLVEAKIRPQDIAFLHPGQDATVKFTAYDYTIYGGLKAKLEQIGADTITDEDKK 395

Query: 376 ASYYLVRVATSQEQIKRLGE-FSLMPGMPVEAFITTGERSVLSYFLKPLL 424
            +YY++++ T +  +    +   ++PGM     I TG+++VLSY LKP++
Sbjct: 396 TTYYIIKLRTERSHLGTDEKPLLIIPGMVASVDIITGKKTVLSYLLKPII 445