Pairwise Alignments

Query, 434 a.a., bacteriocin ABC transporter permease from Agrobacterium fabrum C58

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella loihica PV-4

 Score =  165 bits (417), Expect = 3e-45
 Identities = 117/421 (27%), Positives = 203/421 (48%), Gaps = 25/421 (5%)

Query: 32  WAVGTEIVGAVIAQGSLVVETSLKKVQHPVGGVVSELMVRDGDRVKAGDVVMRIDATMTR 91
           WA   E+       G ++  + ++ +Q   GG++ EL VR+G  V  G  ++RID T  R
Sbjct: 45  WAYFAELDRVTTGTGKVIPSSQVQVIQSLDGGIMKELYVREGMTVTKGQPLVRIDDTRFR 104

Query: 92  ANLAIVVKSLDQFTARKARLEGE------RDRAAS-----------VVFPQSLRDRAGDA 134
           ++ A   + +    A   RL  E       D AA            + FP  L +   D 
Sbjct: 105 SDFAQQEQEVYSLQANVIRLRAELNSITISDVAADWREQVKIAKQPLQFPPELTESEHD- 163

Query: 135 EVLAMMNAEQRLYEDRRAVRESKKRQLEQRVRQLRDEISGLEAERAANVREQGMVDEELI 194
               ++  ++  Y  R     ++   L ++++Q + E   L ++         +V  EL 
Sbjct: 164 ----LIERQRDEYSGRLDNLSNQLEILARQIQQKQQETEELASKINTLTTSFQLVTRELE 219

Query: 195 RFRSLQERGLLDKSRLSTLERQATDIDGDIGRLRAGIAGIEAKISETALQILQIDEQWSE 254
             R L ++G++ +  L  LER   DI G++  LR     ++A   E  L+  +    ++ 
Sbjct: 220 LTRPLADKGIVPEVELLKLERNVNDIRGELSSLRLLRPKLKASQDEAILKRREAVFVYAA 279

Query: 255 EVGSDLREMDARIGEYVERRVAAEDQLKRVDILAPQDGVVHQLAVHTVGGVIAPGEQIMM 314
           E  + L EM  R+    E +V A D++ + +I++P +G +  + ++T+GGV+ PG  I+ 
Sbjct: 280 EARTQLNEMQTRLSRINEAQVGARDKVSKAEIVSPVNGTIKTVHINTLGGVVQPGIDIIE 339

Query: 315 IVPEVDKLVVEAKVAPQDIDQIYFGQVTNLRFSAFNQKTTPEITGTVERISADVTVDQRT 374
           IVP  D+L++E K+ P+DI  ++ G    ++ +A++      + G VE ISAD T D+  
Sbjct: 340 IVPSEDQLLIETKIIPKDIAFLHPGLPAVVKVTAYDFTRYGGLNGVVEHISADTTQDEE- 398

Query: 375 GASYYLVRVATSQEQIKRLGE--FSLMPGMPVEAFITTGERSVLSYFLKPLLDQANRTFR 432
           G S+YLVRV T    + +       ++PGM     + TG+RSVL Y L P+L   +   R
Sbjct: 399 GNSFYLVRVRTELSSLTKDDGTLMPIIPGMLTTVDVITGQRSVLEYILNPILRARDTALR 458

Query: 433 Q 433
           +
Sbjct: 459 E 459