Pairwise Alignments

Query, 340 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 79.3 bits (194), Expect = 1e-19
 Identities = 71/278 (25%), Positives = 124/278 (44%), Gaps = 10/278 (3%)

Query: 9   AAMVLAAGTSVHAQEQSFKIGLSNSFVGSEWRTQMIEEAQAAAKAWGEKGVKVEVVVQSG 68
           +A +L+   S  AQ Q   + +  S + + +   M + A+A AK  G       ++V   
Sbjct: 11  SAALLSTSVSFVAQAQD-TVAIVLSTLNNPFFVTMKDGAEAKAKELG-----YNLIVLDS 64

Query: 69  NVDVQGQIGHIRNFMNQGVDAILINPGSPTAFDPIFAQAKARNILVIATDAEVSSKDAL- 127
             D   ++ ++ +   +GV AILINP    A       A    I V+  D   S  + + 
Sbjct: 65  QNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEVVS 124

Query: 128 YVGIDQKAWAAQSAQWLADALKGKGSVVAINGIAGNPANEARVAGYREVFKKYPDIKVLN 187
           ++  D       +  ++   +     V+ + GIAG  A   R  G+    K    +++L 
Sbjct: 125 HIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKG-SKMQLLA 183

Query: 188 EANASWDQAQGQQAMQNLLATYPDISGVWVQ-DGMADGAWRAIEAAGKTKDIAATGEIRK 246
              A +D+ +G   M+NLLA  PD+  V+ Q D MA GA RAI+A+GK+  I    +   
Sbjct: 184 SQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKSVMIVGF-DGTD 242

Query: 247 DFMTRWEKEKFNSGASVNPPGVMASALNVAVLKLQGKE 284
           D +   E+ +  +  +  P  + A  +  A   L+G++
Sbjct: 243 DGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEK 280