Pairwise Alignments

Query, 340 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 316 a.a., D-mannose ABC transporter, substrate-binding component (from data) from Herbaspirillum seropedicae SmR1

 Score =  102 bits (253), Expect = 2e-26
 Identities = 89/322 (27%), Positives = 146/322 (45%), Gaps = 24/322 (7%)

Query: 1   MFRNLMAAAAMVL----AAGTSVHAQEQSFKIGLSNSFVGSEWRTQMIEEAQAAAKAWGE 56
           M +N +A A   L    AA  ++ A +    +G++   VG       +  A+ A     +
Sbjct: 1   MIKNTIAIACSTLLLAAAAQPAMAADKPLKSVGVT---VGDLANPFFVAIAKGAESGAHK 57

Query: 57  KGVKVEVVVQSGNVDVQGQIGHIRNFMNQGVDAILINPGSPTAFDPIFAQAKARNILVIA 116
                +V V S   D+  Q+G I NF+   VD I++N        P   +A+   I+V+A
Sbjct: 58  INPDAKVTVVSSKYDLNTQVGQIENFIANKVDLIVLNAADSKGVGPAVKKAQKAGIVVVA 117

Query: 117 TDAEVSSKDALYVGIDQKAWAAQSAQWLADALKGKGSVVAINGIAGNPANEARVAGYREV 176
            D   +  D   +  D     A+S ++LA+ L+GKG+VV +NG   +   + RV G +  
Sbjct: 118 VDVAAAGADVTVMS-DNTMAGAESCKFLAEKLQGKGNVVIVNGPPVSAVMD-RVTGCKAE 175

Query: 177 FKKYPDIKVLNE-ANASWDQAQGQQAMQNLLATYPDISGVW-VQDGMADGAWRAIEAAGK 234
           FKK P IK+L++  NA   +  G   M NLLA  P I  V+ + D  A GA  AI  A K
Sbjct: 176 FKKSPGIKILSDNQNAGGSRDGGMTTMSNLLAAQPKIDAVFAINDPTAIGAELAIRQA-K 234

Query: 235 TKDI----AATGEIRKDFMTRWEKEKFNSGASVNPPGVMASALNVAVLKLQGKEFKDGIF 290
             DI       G    +   +  K  F +  + +P G+ A ++ +    + G+  +  + 
Sbjct: 235 RSDIKWISGVDGAPDAERALKDSKSLFAASPAQDPYGMAAESVAIGYAVMNGRAPQQKV- 293

Query: 291 GGTYGNAVYIPIPFVSSDNLAD 312
                    +P+  ++ DN+AD
Sbjct: 294 -------KLLPVKLITRDNVAD 308