Pairwise Alignments

Query, 612 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 1077 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  253 bits (646), Expect = 3e-71
 Identities = 144/417 (34%), Positives = 230/417 (55%), Gaps = 9/417 (2%)

Query: 185  ANIDSLTGLPNRRAFFAHLEVELANAREKGTRLALGVIDLDGFKPVNDLYGHSVGDRLLI 244
            A+ D+LTGLPNR+ F   L+ E+  A+    +LA+ +IDLD FK +ND+ GH+ GD LL 
Sbjct: 633  AHFDTLTGLPNRKLFNERLQHEIQLAQHDSRKLAILLIDLDQFKYINDVQGHATGDLLLQ 692

Query: 245  NVSKRLTANL--KASKAFRLGGDEFAIVAPIIPDDAQLVANANAISEELRAPYHMPEGTV 302
            +V+KRL  N+  K     R+GGDEF ++ P + ++  +   A+ I E L  P+++ E  +
Sbjct: 693  DVAKRLE-NIAGKNDLIARIGGDEFVLILPRVTNEFAIEHMASRIIETLSTPFNLNEREI 751

Query: 303  HVSASMGIAVFPHLASTLEQLFDRADYALYHAKKTRRGDAVLFDAEHEKQINIEARIEHL 362
             +SAS GI V+P     +  L    + A+Y AK   R +   F +   + +     +E  
Sbjct: 752  QISASFGIGVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMELEQR 811

Query: 363  LKQSDLKNELSVMFQPIVDIRDGKTAGFEALARWHSPVLGHVPPAQFFAIAERAGIVGSL 422
            L+++  ++E ++ +QPIV+++ GK    EAL RW  P LG +PP QF  IAE  G++  +
Sbjct: 812  LRRAVAQDEFTLHYQPIVEMKTGKVCSVEALIRWQDPDLGLIPPDQFIGIAEETGLIEPM 871

Query: 423  TRPLLKMALASASTWDP-SLRLSFNLSAQDLNCHEGVLSLIGIIENSCF-----DTRRLD 476
               +L  A+     W    L+L+  ++     C          +   CF     + R + 
Sbjct: 872  GEWVLNQAMHDLRQWQQLGLQLNVAINVSSRQCVNARGMGFDQVLQECFNRHHINPRNVH 931

Query: 477  LEITETAFAHDFEQVRQSVDMLRRLGCGISLDDFGTGYSSLTRLHALPLTKIKIDRSFVT 536
            +EITE+    D      +++ +RRLG  I +DDFGTGYSSL+ L   P++ IKIDRSFV 
Sbjct: 932  IEITESMLMGDASHCLSTLEAIRRLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVE 991

Query: 537  DLHEKPASYKIVKSLLALSRDMELECVVEGVETSAELTTLEGLGATLVQGYIYAPPL 593
            +     ++  +VK+++ + + +E+E V EG+ET A+   L  LG    QGY+ + PL
Sbjct: 992  NALSNNSNTNLVKAIVMMGQSLEMELVAEGIETEAQWNLLRDLGCHYAQGYLISKPL 1048