Pairwise Alignments

Query, 816 a.a., VgrG protein from Agrobacterium fabrum C58

Subject, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  246 bits (629), Expect = 2e-69
 Identities = 155/464 (33%), Positives = 233/464 (50%), Gaps = 13/464 (2%)

Query: 106 YALTIRPQMWLLSRRSDCRIWMDKTAVEIVETLFSEHGIPAPDTSGIISPPPAQH-YSVQ 164
           Y LT+ P +  LS R + RI+  +T  EI+  L  E GI   D +  +     Q  + VQ
Sbjct: 98  YQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEMGIH--DYAFALKRDCVQREFCVQ 155

Query: 165 FNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADSASGWLG-PSPAAQGEGMVRLAQGS 223
           + E+D+D+L R   E+GL Y F HE G H L+ +D++      P P         LA G+
Sbjct: 156 YRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKLPEPIPYNA----LAGGT 211

Query: 224 SDRNHINDWARRFSYVSGQRAGADWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIK 283
            D  +I+    R      +    D++F+ P                 T+ + ++ P R K
Sbjct: 212 MDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHFDAPGRYK 271

Query: 284 TVEEAERAQKLRTQAIEADHDRVFGSSTTRILEAGRRFTPFEVAHPEHAYEEHVIVRASH 343
                    ++R   +        G S   +L AG +F   E   P     + V+V  +H
Sbjct: 272 DDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPA-MNRDWVVVSINH 330

Query: 344 SIVD---LSYETNSNEPEYRNHFEAIPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIH 400
                  L  E  S    Y N F  IP  +        K P+++G  +A V GPEGEEI 
Sbjct: 331 QGEQPQALQEEGGSGATTYNNQFSLIPGHLHWRAEPQPK-PQVDGPMIATVVGPEGEEIF 389

Query: 401 PDQYGRIKLWFPWDRKAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPD 460
            D++GR+K+ FPWDR +  +   +CWVRVSQ W G  +G   IPRIG EV+V+F++GDPD
Sbjct: 390 CDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVSFLNGDPD 449

Query: 461 KPLVIGVVNNPANSVPYDLPANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQ 520
           +P++ G   +  N+ PY LP +KT+ VLR+ +H+G+GFNE++FED+AGKE  + HAQKD 
Sbjct: 450 QPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAGKEQIYLHAQKDF 509

Query: 521 TTRVLNDRTKRIDRHEVASVGGNRAVEVSGNQKHEIGGSVNTVV 564
              + ND T  I   +  +V  ++  ++  NQ   + G   T+V
Sbjct: 510 DGLIENDHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGESRTLV 553



 Score = 29.3 bits (64), Expect = 8e-04
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 12/109 (11%)

Query: 704 QNLTIGKEQFVEIGTGQYTRV-GEKITINV--------GKLYNLVSEEKYHGEAKVWEIF 754
           Q+LT+  +QF +I   Q+  V GE  T+          G L   +  +  +       + 
Sbjct: 525 QHLTVENDQFTQIKHNQHLTVEGESRTLVKLDCSSEIGGSLQQKIGSKAIYDAGTEVHLK 584

Query: 755 ADDEIRLSTPGGYISLTKSG--IKLFALKIDIEGNQINFKKGGPGESGS 801
           A +++ L   G  +++   G  IK+ A  + + G+ IN   GG   SGS
Sbjct: 585 AGNKLVLEA-GNELTIKAGGSFIKVDAGGVHVVGSAINLNSGGSAGSGS 632