Pairwise Alignments

Query, 892 a.a., ATP-dependent Clp protease, ATP-binding subunit from Agrobacterium fabrum C58

Subject, 896 a.a., ClpB protein from Pseudomonas fluorescens FW300-N2E2

 Score =  682 bits (1759), Expect = 0.0
 Identities = 387/892 (43%), Positives = 550/892 (61%), Gaps = 44/892 (4%)

Query: 1   MSHIDLNRLVGALEPDLRVTLEAAASVAVRMGHRYVDIPHW---LLAVVDAGIYAETFDE 57
           M  I    L G L       +EAA       G+ YV++ HW   LL + D+ ++     +
Sbjct: 1   MGEISRAALFGKLNSVAYKAIEAATVFCKLRGNPYVELAHWFHQLLQLQDSDLH-RIIRQ 59

Query: 58  LKIPLPVLKAEIGRSLEEAIIGDGEALSLSQNILTAAREAWILASLEAGRDRVTLCDLLL 117
             I    L  ++  +L+    G      LS ++  A    W+  SL  G  +V    L+L
Sbjct: 60  FNIEPARLARDLTEALDRLPRGSTSITDLSSHVEEAVERGWVYGSLMFGESQVRTGYLVL 119

Query: 118 AMDEETSLRSFVRSAFPSLKAMDRGALERLRSSAENGAGVDVPSALTSS---------GE 168
            + +  SLR    +        D+  +E L    +   G    +ALT+S         GE
Sbjct: 120 GILKTPSLR---HALLGLSSEFDKVKVEALSERFDEYVGDSPENALTASDGFNAGAVPGE 176

Query: 169 AGSAQAA---GQNDFLRLYTHDMTTDARNGKVDPVIGRDDELRQLVDILTRRRQNNPILV 225
           A  A A    G+ + L+ +T D+T  AR+GK+DP++GRD+E+RQLVDIL RRRQNNPIL 
Sbjct: 177 ASGAMAPSAMGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILT 236

Query: 226 GEAGVGKTAVAEALALEIASGNVPEKLRNVCLLNLDISLLQAGAGVKGEFERRLHGVIDA 285
           GEAGVGKTAV E  AL I +G+VP  L++V L +LD+ LLQAGA +KGEFE+RL  VI+ 
Sbjct: 237 GEAGVGKTAVVEGFALRIVAGDVPPALKDVELRSLDVGLLQAGASMKGEFEQRLRQVIED 296

Query: 286 VKRSAEPVILFIDEAHGLVGAGGAAGQGDAANILKPALARGEVRTVAATTWSEYKKYFEK 345
           V+ S +P+ILFIDEAH LVGAGGAAG GDAAN+LKPALARG +RTVAATTW+EYKK+ EK
Sbjct: 297 VQASPKPIILFIDEAHTLVGAGGAAGTGDAANLLKPALARGTLRTVAATTWAEYKKHIEK 356

Query: 346 DAALTRRFQPVHVREPDEATAIRMLRGVADTFVSHHNVTVRDEAIVAAVQLSARYMPARQ 405
           D ALTRRFQ V V EP E  A+ M+RGVA T   HH V + DEA+ A+V+LS RY+PARQ
Sbjct: 357 DPALTRRFQVVQVAEPSEDKALLMMRGVASTMEKHHQVQILDEALEASVKLSHRYIPARQ 416

Query: 406 LPDKAVSLLDTAAAAVSLARQTLP-------ERLRAMESERHLLSDE--LNWLLREPQDE 456
           LPDK+VSLLDTA A V+++   +P        R+ A+E+E  +++ E  +  ++   Q +
Sbjct: 417 LPDKSVSLLDTACARVAISLHAVPAEVDDSRRRIEALETELQIIAREHAIGVVIGSRQTQ 476

Query: 457 DMQNRIQSIRDELERLEAGIDDLRGRYDAEMAELAALSE------EQPAETGASNVSH-- 508
             ++ + + R+ L  LE+   + +   D  +A  A L E       + A   A N SH  
Sbjct: 477 -TESLLSAERERLAELESRWAEEKTLVDELLATRATLRERVGVVDSEDASEAADNESHAL 535

Query: 509 ------LRPATEMRPANAERLVPTVVDREAIAAVVSRWTGIPLGKLLADQIESARTLDVR 562
                 L+            ++PT VD +A+A+VV+ WTGIP+G++  +++E+   LD  
Sbjct: 536 REKLVDLQQRLTALQGETPLILPT-VDYQAVASVVADWTGIPVGRMARNELETVLNLDQH 594

Query: 563 MRQRVVGQDAAITRIADAMRTARAGLSDPRRPPAVFFLVGMSGTGKTETALSLADLLYGG 622
           +++R++GQD A+  IA  ++T+RAGL +P +P  VF L G SG GKTETAL+LA+ +YGG
Sbjct: 595 LKKRIIGQDHALQMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTETALALAEAMYGG 654

Query: 623 NSHLTTINMSEFKEEHKVSLLLGSPPGYVGFGEGGVLTEAVRRRPFGVLLLDEIDKAHPG 682
             ++ TINMSEF+E H VS L G+PPGY+G+GEGGVLTEAVRR+P+ V+LLDE++KAHP 
Sbjct: 655 EQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPD 714

Query: 683 VQDIFYQVFDKGVLRDGEGRDVDFKNTTIFMTANTGSELLSALSADPDTMPEGEALEALL 742
           V +IF+QVFDKGV+ DGEGR +DFKNT I +T N G+EL++ +  DP  +PE E +   L
Sbjct: 715 VHEIFFQVFDKGVMEDGEGRVIDFKNTLILLTTNAGTELIADVCKDPQNVPEPEEIAKAL 774

Query: 743 MPELTKQFKPAFLGRTIILPFMPLGAEELASVVDMQIGKIRDRVLATYGTDLRLSDAARD 802
              L + F PA LGR + +P+ PL  E L ++  +Q+ +I+ RV +T+       DA  D
Sbjct: 775 RQPLLEIFPPALLGRLVTIPYYPLSDEMLKAITRLQLNRIKKRVESTHKVAFDYDDAVID 834

Query: 803 ALVARAGASEIGARAIEIMIGKDLLPPLSSFFLEKVIAGERVGKIVVDFGEN 854
            +V+R   +E G R I+ ++   LLP +S  FL +++ G+ +  + ++  +N
Sbjct: 835 LIVSRCTETESGGRMIDTILTNSLLPDMSREFLTRMLEGKALAGVRINAVDN 886