Pairwise Alignments

Query, 892 a.a., ATP-dependent Clp protease, ATP-binding subunit from Agrobacterium fabrum C58

Subject, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

 Score =  591 bits (1524), Expect = e-173
 Identities = 361/878 (41%), Positives = 510/878 (58%), Gaps = 54/878 (6%)

Query: 1   MSHIDLNRLVGALEPDLRVTLEAAASVAVRMGHRYVDIPHWLLAVVDAGI--YAETFDEL 58
           M  I+L  L+  L    ++ LE AAS+ +   H  V + ++L  ++D  +        + 
Sbjct: 1   MIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQA 60

Query: 59  KIPLPVLKAEIGRSLEEAIIGDGEALSLSQNILTAAREAWILASLEAGRDRVTLCDLLLA 118
            + +  +K  I  +     + D    + S  ++   +EAW+L+S E  +  +    + LA
Sbjct: 61  GLEVDQVKQAIASTYSREQVLDTYP-AFSPLLVELLQEAWLLSSTELEQAELRSGAIFLA 119

Query: 119 MDEETSLRSFVRSAFPSLKAMDRGALER-----LRSSAENGAGVDVPSALTSSGEAGSAQ 173
                  R          + ++R  L++     L  SAE         A T    A   Q
Sbjct: 120 ALTRAD-RYLSFKLISLFEGINRENLKKHFAMILSDSAETAV------AKTDKNAANPLQ 172

Query: 174 AAGQNDFLRLYTHDMTTDARNGKVDPVIGRDDELRQLVDILTRRRQNNPILVGEAGVGKT 233
           AA +    R  T+ +T  ARNG++DPV+ R++EL  +VDIL RRR+NNPI+VGEAGVGK+
Sbjct: 173 AAAETPLGRFCTN-VTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKS 231

Query: 234 AVAEALALEIASGNVPEKLRNVCLLNLDISLLQAGAGVKGEFERRLHGVIDAVKRSAEPV 293
           A+ E LAL + +G VP +L+NV L +LD+  LQAGA VKGEFE+RL GVIDA+K+S +P+
Sbjct: 232 AMIEGLALRVVAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPI 291

Query: 294 ILFIDEAHGLVGAGGAAGQGDAANILKPALARGEVRTVAATTWSEYKKYFEKDAALTRRF 353
           ILFIDEAH L+G+G   G  DAAN+LKPALARGE+ TVAATTW EYKKYFEKD ALTRRF
Sbjct: 292 ILFIDEAHTLIGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRF 351

Query: 354 QPVHVREPDEATAIRMLRGVADTFVSHHNVTVRDEAIVAAVQLSARYMPARQLPDKAVSL 413
           Q V + EP    A+ +LRG+   +   HNV + D+A+ AA +LSARY+  RQLPDKA+ +
Sbjct: 352 QLVKLDEPTIDQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDV 411

Query: 414 LDTAAAAVSLARQTLPERLRAMESERHLLSDELNWLLREP---QDEDMQN----RIQSIR 466
           LDTA A +++   T P+RL  +E+  H    E++ L R     Q+ D +     R Q + 
Sbjct: 412 LDTACARIAINMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELA 471

Query: 467 DELER------------LEAGIDDLRGRYDAEMAELAALSEEQP-----AETGASNVSHL 509
           DE E+            L   I  LR    AE+ EL+   E+ P       T        
Sbjct: 472 DEAEKAALTQSWQQQKSLVESIIALR----AELMELSQAQEQDPDHLLVVRTALQEQYQA 527

Query: 510 RPATEMRPANAERLVPTVVDREAIAAVVSRWTGIPLGKLLADQIESARTLDVRMRQRVVG 569
             A +    +AERL+   VD + IA V++ WTG+P+ ++  D++     L   + Q + G
Sbjct: 528 LDAID----HAERLMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKG 583

Query: 570 QDAAITRIADAMRTARAGLSDPRRPPAVFFLVGMSGTGKTETALSLADLLYGGNSHLTTI 629
           Q+ AI RI   + TARA L  P RP   F LVG SG GKTET + LA+ LYGG   LTTI
Sbjct: 584 QETAIERIHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTI 643

Query: 630 NMSEFKEEHKVSLLLGSPPGYVGFGEGGVLTEAVRRRPFGVLLLDEIDKAHPGVQDIFYQ 689
           NMSE++E+H VS L+GSPPGYVG+GEGGVLTEA+R+ P+ V+LLDE++KAHP V +IFYQ
Sbjct: 644 NMSEYQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQ 703

Query: 690 VFDKGVLRDGEGRDVDFKNTTIFMTANTGSELLSALSADPDTMPEGEALEALLMPELTKQ 749
            FDKG + DGEGR +D +N   F+T+N G + +   + +P  + E       L PEL   
Sbjct: 704 GFDKGEIADGEGRVIDCQNIVFFLTSNLGYQTIVDYADEPAKLDEA------LYPELAAF 757

Query: 750 FKPAFLGRTIILPFMPLGAEELASVVDMQIGKIRDRVLATYGTDLRLSDAARDALVARAG 809
           FKPA L R  ++P++PLG E LA +V  ++ ++       Y  ++ + ++  D +++RA 
Sbjct: 758 FKPALLARMEVIPYLPLGKEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLIDEILSRAT 817

Query: 810 ASEIGARAIEIMIGKDLLPPLSSFFLEKVIAGERVGKI 847
            SE GAR +E +I   LLPP+S   L K+     V +I
Sbjct: 818 RSENGARMLEAIIEGQLLPPVSLALLNKLAERAPVERI 855