Pairwise Alignments

Query, 892 a.a., ATP-dependent Clp protease, ATP-binding subunit from Agrobacterium fabrum C58

Subject, 862 a.a., endopeptidase Clp ATP-binding chain B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  514 bits (1323), Expect = e-149
 Identities = 318/789 (40%), Positives = 473/789 (59%), Gaps = 54/789 (6%)

Query: 102 SLEAGRDRVTLCDLLLAM-DEETSLRSFVRSAFPSLKAMDRGALERLRSSAENGAGVDVP 160
           S E G + V+L  +LLA+   ++++ + ++ A  + K + R A+  LR            
Sbjct: 96  SKEMGDEFVSLEHILLALLTVKSTVSTILKDAGMTEKEL-RNAINELRK----------- 143

Query: 161 SALTSSGEAGSAQAAGQN-DFLRLYTHDMTTDARNGKVDPVIGRDDELRQLVDILTRRRQ 219
                 GE  ++Q++  N   L  Y  ++   AR+GK+DPVIGRD+E+R+++ IL+RR +
Sbjct: 144 ------GEKVTSQSSEDNYQSLEKYAINLNEAARSGKLDPVIGRDEEIRRVLQILSRRTK 197

Query: 220 NNPILVGEAGVGKTAVAEALALEIASGNVPEKLRNVCLLNLDISLLQAGAGVKGEFERRL 279
           NNPIL+GE G GKTA+ E LA  I  G+VPE L+N  + +LD+  L AGA  KGEFE RL
Sbjct: 198 NNPILIGEPGTGKTAIVEGLAHRILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERL 257

Query: 280 HGVIDAVKRSAEPVILFIDEAHGLVGAGGAAGQGDAANILKPALARGEVRTVAATTWSEY 339
             V++ VK+S   +ILFIDE H LVGAG   G  DAANILKPALARGE+R++ ATT  EY
Sbjct: 258 KSVVNEVKKSEGDIILFIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEY 317

Query: 340 KKYFEKDAALTRRFQPVHVREPDEATAIRMLRGVADTFVSHHNVTVRDEAIVAAVQLSAR 399
           +KYFEKD AL RRFQ V V EPD  + I +LRG+ + + +HH+V ++D+AI+AAV+LS+R
Sbjct: 318 QKYFEKDKALERRFQIVQVDEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSSR 377

Query: 400 YMPARQLPDKAVSLLDTAAAAVSLARQTLPERLRAMESERHLLSDELNWLLRE---PQDE 456
           Y+  R LPDKA+ L+D AAA + +   ++PE L  +  +   L  E   + RE   P+ E
Sbjct: 378 YITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKLE 437

Query: 457 DMQNRI-----------------QSIRDELERLEAGIDDLRGRYDAEMAE----LAALSE 495
            +   +                 +++ D++++ +  I++L  +++AE AE       ++E
Sbjct: 438 IIGKELAELKEVEKSFKAKWQSEKTLMDKIQQNKVEIENL--KFEAEKAEREGDYGKVAE 495

Query: 496 EQPAETGASNVSHLRPATEMRPANAER-LVPTVVDREAIAAVVSRWTGIPLGKLLADQIE 554
            +  +  A +        ++R    ++ ++   VD E IA VVSRWTGIP+ K++  + +
Sbjct: 496 IRYGKLQALDKEIEDTQEKLRGMQGDKAMIKEEVDAEDIADVVSRWTGIPVSKMMQSEKD 555

Query: 555 SARTLDVRMRQRVVGQDAAITRIADAMRTARAGLSDPRRPPAVFFLVGMSGTGKTETALS 614
               L+  + QRV+GQD AI  +ADA+R +RAGL DP+RP   F  +G +G GKTE A +
Sbjct: 556 KLLHLEDELHQRVIGQDEAIEAVADAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTELAKA 615

Query: 615 LADLLYGGNSHLTTINMSEFKEEHKVSLLLGSPPGYVGFGEGGVLTEAVRRRPFGVLLLD 674
           LA+ L+   S +T I+MSE++E+H VS L+G+PPGYVG+ EGG LTEA+RR+P+ V+L D
Sbjct: 616 LAEFLFDDESMMTRIDMSEYQEKHSVSRLVGAPPGYVGYDEGGQLTEAIRRKPYSVVLFD 675

Query: 675 EIDKAHPGVQDIFYQVFDKGVLRDGEGRDVDFKNTTIFMTANTGSELLSALSADPDTMPE 734
           EI+KAHP V +I  QV D G L D +GR V+FKNT I MT+N GS  + +         +
Sbjct: 676 EIEKAHPDVFNILLQVLDDGRLTDNKGRVVNFKNTIIIMTSNMGSSYIQSQMEKLSGSNK 735

Query: 735 GEALEAL---LMPELTKQFKPAFLGR-TIILPFMPLGAEELASVVDMQIGKIRDRVLATY 790
            E +E     +M  L K  +P FL R    + F+PL   E+  +V +QI  ++ ++LA  
Sbjct: 736 EEVIEETKKEVMNMLKKNIRPEFLNRIDETIMFLPLTETEIRQIVLLQIKGVQ-KMLAEN 794

Query: 791 GTDLRLSDAARDALVARAGASEIGARAIEIMIGKDLLPPLSSFFLEKVIAGERVGKIVVD 850
           G +L ++DAA + L       E GAR ++  I + LL  LS   L + +  +R   I+VD
Sbjct: 795 GVELEMTDAALNFLSQVGYDPEFGARPVKRAIQRYLLNDLSKKLLSQEV--DRSKAIIVD 852

Query: 851 FGENGFGIR 859
              +G   R
Sbjct: 853 SNGDGLVFR 861