Pairwise Alignments

Query, 493 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 492 a.a., type VI secretion system contractile sheath large subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  331 bits (849), Expect = 3e-95
 Identities = 185/484 (38%), Positives = 270/484 (55%), Gaps = 28/484 (5%)

Query: 21  LLSKVVSATRQTEPDRAQNLLRTLTDQALKGTVKYDRNLTVTLNHA-----------IAE 69
           LL ++++ TR    +   ++       A KG   +  NL  + + A           + E
Sbjct: 19  LLDEIMAQTRIAPSEEGYDI-------AKKGVAAFIENLMGSQHSAEPVNKSLVDQMLVE 71

Query: 70  LDRTISEQLAAIMQAPEFAKLEGTWRGLNYLVKNSETSVNLKIRVMNAGKRELARDLEKA 129
           LD+ IS Q+  I+   +F  +E  WRGL   V  ++   N K+ +++  K EL  D E A
Sbjct: 72  LDKKISAQMDEILHNSQFQAMESAWRGLKLFVDRTDFRENNKVEILHVTKDELLEDFEFA 131

Query: 130 VEFDQSRLFKAIYEDEFGTPGGEPLGAIIGDYEFGNSFDDVQLLQGVSSIAAAAFAPFIS 189
            E  QS L+K +Y   +G  GGEP+GAIIG+Y F  S  D++LLQ + ++ A A APFIS
Sbjct: 132 PETAQSGLYKHVYSAGYGQFGGEPVGAIIGNYAFTPSTPDMKLLQYMGALGAMAHAPFIS 191

Query: 190 AASPHMFGFEDYRDLARPRDLEKIFDTVEYAKWRSFRESDDSRFVTLALPRVLARMPYGP 249
           +  P  FG + + +L   +DL+  F++ +Y KWRS RES+D+R++ L  PR L R+PY P
Sbjct: 192 SVGPEFFGIDSFEELPNIKDLKSTFESPKYTKWRSLRESEDARYLGLTAPRFLLRVPYDP 251

Query: 250 KTNPVDDFAYDETRGAVNGDLQHDEYCWMNAAYVMGTKLTEAFAKSGWCTAIRGAENGGR 309
             NPV  F Y E     N    H+ Y W N A+   T+LT++FAK  WC  I G ++GG 
Sbjct: 252 IENPVKSFNYAE-----NVSASHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGA 306

Query: 310 VENLPMHVFSSDDGDLDLKCPTEVGITDRRDAELGKLGFLPLCHYKNTDYAVFFGAQTAH 369
           VE+LP+HVF S  G L  K PTEV ITDR++ EL + GF+ L   K +D A FF A +  
Sbjct: 307 VEDLPVHVFES-MGALQSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQ 365

Query: 370 KPKLY----DKPEATANAAVSARLPYIMATSRFAHYLKVMGRDKIGSFMEASDCEVWLNR 425
           KPK++    +  EA  N  +  +LPY+M  +R AHY+KV+ R++IG++ E  D E  LN 
Sbjct: 366 KPKVFPNTKEGKEAETNYKLGTQLPYMMIINRLAHYVKVLQREQIGAWKERQDLERELNS 425

Query: 426 WIANYVNANDEAGEESRAKYPLRDAKVTVQEVPGKPGAYNAVAWMRPWLQMEELTTSLRM 485
           WI  YV   +    + R++ PLR A++ V +V G PG Y     +RP  +       L +
Sbjct: 426 WIKQYVADQENPPADVRSRRPLRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGANFELSL 485

Query: 486 VARI 489
           V R+
Sbjct: 486 VGRL 489