Pairwise Alignments

Query, 593 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

 Score =  233 bits (595), Expect = 1e-65
 Identities = 178/610 (29%), Positives = 287/610 (47%), Gaps = 52/610 (8%)

Query: 9   YNDELFALRKRASRFAAAFPKIAGRLRMTGDVADDPHVERLIQSFAYSAARVRQKLDDEF 68
           + +EL  L+++   F    P+++   R       DP VERL++ FA+  AR+R+K++DEF
Sbjct: 7   FREELAFLKEQGKEFTEIHPQLS---RFLHGRTTDPDVERLLEGFAFLTARLREKVEDEF 63

Query: 69  PELSDSLLETLYPHYLAPIPSMSVVQFAPSPALATVQTLARHSEILAEPVGGESCRFRTT 128
           PEL+ S++  L+P+YL PIPSMSVV F P  +++  Q + R++++ ++PV G +C F T 
Sbjct: 64  PELTHSIINMLWPNYLRPIPSMSVVAFEPDKSVSEKQVIPRNTQLDSKPVFGTACHFNTC 123

Query: 129 QEVQIAPLQIAAATLAGQPIDAPFSASFAGTASCLRLSLRSTAPRGGTFPEMGLTKLQVF 188
           ++V + P+Q                A     A+ +++SLR       T  +  L  ++ +
Sbjct: 124 RDVALYPMQCQGV-----------HAEHTREATTIQISLRMLGDM--TVGDAKLDTVRFY 170

Query: 189 LSAAWQQATALYELLTNHCVGMALARHSEDKEAIFLPAGNLRPSGFTRDQAMLPYPANSF 248
           L      +  LY  L ++   M +     +     LPA      GF+ DQA+LPYP N +
Sbjct: 171 LGGDKYSSQTLYLWLHHYLQKMTIEVQGVE---FALPADAFSTVGFSSDQALLPYPKNVY 227

Query: 249 DGYRLLTEFFALPQKFLFLDIDG----LHRWSGGDCELYIYLDAADAQLERMVSVKDFVL 304
           DGYR+L E+ + P+ F F D+ G    L +   GD  L I+  +     +  V   +F L
Sbjct: 228 DGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHF-SKTLPADTRVRQDNFQL 286

Query: 305 NASPVINLFKQSCEPLSLDGTRTEYRLLPDARRQRTREIYAVEDV---QLTSRSGQS--- 358
             +PVINLF+   +P+ L G R+EYR++P +R     EI++V+ V   Q T   G+    
Sbjct: 287 YCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQSEGKRIRG 346

Query: 359 --------EKTSPFFGRTQRNNGANVFWQIQRRFDDDGSSDTDIAFVDEKRGPLGPLDVV 410
                   E       R +         +++     DG  D+ I+FV         +D  
Sbjct: 347 EKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGDG-FDSFISFVRGDETLSMGVDEA 405

Query: 411 ASIDTLCINRELPSQLPFGGGHPFLQLSTGNEAVKSVHALMPPTAAIRVNERSAREWRLI 470
            SI   C NR LP +L  G        +  +    +   +  P+ ++R     +  W LI
Sbjct: 406 VSIKLTCTNRLLPLELGVG---DICVATDSSPPFATFKNITVPSQSLRPVLDGSLLWTLI 462

Query: 471 SHLLLNHLSLTDSGGAPLKDILSLYSFRDSPE------TRQLVEAISKVEAQNSHARIGA 524
           S+L LN+LSL       L  +L  Y FR   +       R  ++ I K+E++     +  
Sbjct: 463 SNLSLNYLSLLSKDA--LSCVLRAYDFRALVDRQAERVARMRLDGIVKIESKPVDKILRG 520

Query: 525 TMVPGTDITVEFDPALIARPA-AFVFAGVLNHFFGLYTSINSFTRLTATMRGHSKPIARW 583
             V G   T+  D A        F+F  VL+HFF LY SINSF  L      + +  + W
Sbjct: 521 LPVRGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYASINSFHELVVVNISNQEKYS-W 579

Query: 584 PARAADRPLL 593
             ++  +PL+
Sbjct: 580 GTQSGMQPLI 589