Pairwise Alignments

Query, 446 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 444 a.a., type VI secretion system baseplate subunit TssK from Vibrio cholerae E7946 ATCC 55056

 Score =  328 bits (841), Expect = 2e-94
 Identities = 174/442 (39%), Positives = 255/442 (57%), Gaps = 4/442 (0%)

Query: 5   NRVAWSEGMFLRVQHFQQSDRWTERLVRNTTRNLSPYPWGIAEIGVDRSALSIGQFALSN 64
           NRV W+EG+F++ QHFQQ  R+TE  +      +S Y +GI+E+ ++   LS G+ A+  
Sbjct: 5   NRVIWNEGLFIKPQHFQQQQRYTEYCLDERLSTVSRYLYGISELSLNPEYLSFGRIAIER 64

Query: 65  LRGVLPDGTPFEAPEDSDLPPPLDL-DESVKNAIIYLALPARQPGKADMSTSGRNDTNNV 123
             GV+PDGT F  P++  LP  L++ D S+ N I+YLA+P R     +++      T   
Sbjct: 65  AVGVMPDGTTFRIPQEDHLPDALEVTDASLANQIVYLAVPLRSESLMEINWPEERGTG-- 122

Query: 124 RFTASSYEVTDTNIETDFVAPIDVGRLSLKFLKTGDDLSGYDLIGLARVIEVRSDRAVIL 183
           R+ +   EV D +        IDV  + L+ +   +D S Y  I + R++E R D +V+L
Sbjct: 123 RYVSRRLEVRDVHSVQGDTTTIDVSPVRLQLMLEREDRSAYASIAIGRILEKRPDGSVVL 182

Query: 184 DPDFIPPSLSCAAAPRLNELLTELLGIVRHRAQAIAERIGDPTIRGTAEVGDYFLLQILN 243
           DPDFIP  L+      L+  + E+ G++R RA+ IA+RI  P   G A+V D+ LLQ LN
Sbjct: 183 DPDFIPCHLNVVGISALHRFINEMSGLMRERAKNIAQRISSPAQGGVADVSDFMLLQALN 242

Query: 244 RADPLLAHRGANATRFHPIRFYEDCIQLAGELATFTTDRKRATDFPPYRHEDLKATFGAV 303
           R  P + H  A     HP R +E    + GELATFT + +     P Y H+    +F  +
Sbjct: 243 RLQPQMKHL-AELRSLHPERLFECLSCVCGELATFTDESRLPPSLPSYNHDSPSHSFQPL 301

Query: 304 FDDLRTSLSAVLEQAAVAIELVERRHGVRVGTIHDRTLLRDAGFVLAVRADMAAEDIRRR 363
              LR SLS VLE  AV+I+L +R++G+ V  IHD  L+  A F++AV+A M  +++RR 
Sbjct: 302 IRSLRQSLSVVLEPRAVSIQLDKRKYGLMVAPIHDPQLMESAEFIIAVKARMPLDELRRL 361

Query: 364 LPAQIKVGPVERISELVNVALPGIPVRSLPVLPRQLPYRSGTVYFEIDTQSPLWKQLDTS 423
              Q KV  VE+I EL+++ LPGIP+  LPV PRQLPY +G  Y+++D  S  W  L  S
Sbjct: 362 FTQQTKVASVEKIRELISLQLPGIPLTPLPVAPRQLPYHAGYTYYQLDKTSAAWAMLTHS 421

Query: 424 GAIALHLAGEFPGLEMEMWALR 445
              A H+A  F  LE++ WA+R
Sbjct: 422 SGFAFHVAAAFDDLELQFWAIR 443