Pairwise Alignments

Query, 501 a.a., OmpA-like porin from Agrobacterium fabrum C58

Subject, 257 a.a., type IV secretion protein DotU from Vibrio cholerae E7946 ATCC 55056

 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 7/224 (3%)

Query: 65  FHFGGEEVPTLVQSAAPLLNLAHLLRFSDAEPDPDQLRRACVEAITRYERDLASARISPE 124
           F   G+    L+ +A PL  L+  +R      + +Q+ R  +E I   E +L        
Sbjct: 29  FQLRGDNPNVLIDAATPLFGLSLRVRTLTECDNIEQIYRQTIEEIKAIEIELTEQGYEHA 88

Query: 125 RARAAHYVVCATVDDVVLSKPWGVRAGWARSGLVSTFHNDVTGGDRVFDILDHFHQSPGA 184
              A  Y++CA +D+ V+   WG  + WA   ++S FHN+  GG++VF IL      P  
Sbjct: 89  ILMAYRYILCAFLDESVMGTEWGASSLWAEHSMLSRFHNETWGGEKVFTILSRLEGEPHR 148

Query: 185 NKDLLLLIYLCLSLAFEGRTRVSSKGALELSRIRDSLYKTLIGQYGTFERELS-PHWKGV 243
            + LL  IY CL L FEG+ RV   G  E  ++   L++ L     +  ++L+ P    V
Sbjct: 149 YQALLAFIYHCLILGFEGKYRVMEGGQAEREKVISRLHQLLSSLEESEPQDLTRPTDHVV 208

Query: 244 DARHTPLRTMTALWTLLS---LMALAFALGYLFFTLSLNNASDV 284
            A++T  R M  +W++ +   ++ +   LGY +   S   +SDV
Sbjct: 209 RAKYTLSRQM-PVWSVFAGFIVLWVGLFLGYSYVLHS--KSSDV 249