Pairwise Alignments

Query, 501 a.a., OmpA-like porin from Agrobacterium fabrum C58

Subject, 321 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score = 57.4 bits (137), Expect = 7e-13
 Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 29/198 (14%)

Query: 276 LSLNNASDVTFERLAHLPPTETPSVLISNPPPHPPAQVEIPRVVEPPKTVAPRQPSRLEK 335
           L   N +D+  + +     T T  +         PA V   R  EP    AP +   + K
Sbjct: 141 LEYQNLTDINNDIVRARAETATLGIAYKFGGSEEPAPVVEQRPAEPAPVAAPVEKVAVTK 200

Query: 336 LMAFLQPEVDKKLVTLADVNGRLRVRINNSGLFTTGSADVSPQFRDLIQRIGGALAA-EK 394
              F   +                     S  F T SA++ P     + +I G L    +
Sbjct: 201 TFTFQHLD---------------------SSTFATASAELKPATVQKLDKIVGYLNQYPQ 239

Query: 395 FRAVVIGYTDTVPIKTVEFPSNWHLSEARAKAVGDILSQFTGPDA--ILTEGRADSDPIA 452
            +  V+G+TD+   +      N  LSE RA+AV   L +  G DA  I  +G  +S PIA
Sbjct: 240 AKVEVVGHTDSTGSEAY----NQKLSERRAQAVAKAL-EAQGIDASRISAKGLGESSPIA 294

Query: 453 DNKTEEGRQINRRTEIMV 470
            N T EGR+ NRR E+++
Sbjct: 295 SNATAEGREKNRRVELVI 312