Pairwise Alignments

Query, 501 a.a., OmpA-like porin from Agrobacterium fabrum C58

Subject, 275 a.a., chemotaxis motB protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 86.3 bits (212), Expect = 1e-21
 Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 35/241 (14%)

Query: 263 MALAFALGYLFFTLSLNNASDVTF------ERLAHLPPTETPSV--------LISNPPPH 308
           M L FAL  + ++ ++++ ++  F      + L+ +    TP+V         I  P   
Sbjct: 23  MTLLFALFVVLYSFAMSDKNEAKFMVEGLIDSLSKIGLISTPAVNALAPGGTSILEPNTV 82

Query: 309 PPAQVEIPRVVEPPKTVAPRQPSR---------------LEKLMAFLQPEVDKKLVTLAD 353
             A    P+++E   T      S                 E + A L+ E++ + V + +
Sbjct: 83  TSAVDAEPKLIETATTAPSTSESNNDLTNAKSNDTIRKYKEIISAKLKNEIENQEVEIDE 142

Query: 354 VNGRLRVRI-NNSGLFTTGSADVSPQFRDLIQRIGGALAAEKFRAVVIGYTD-TVPIKTV 411
           V+  L +RI +N+  F +GSA + P+F  LI +IG  +A+   R V+ G+TD T+P++  
Sbjct: 143 VSDNLIIRIGDNNTFFASGSAFIQPKFIPLIDKIGEVIASVPGRVVIAGHTDATLPMEI- 201

Query: 412 EFPSNWHLSEARAKAVGDILSQFTG--PDAILTEGRADSDPIADNKTEEGRQINRRTEIM 469
            +  NW LS  RA AV  I+++  G  P  I+ +G AD+ P   N T E RQ NRR EI+
Sbjct: 202 -YADNWDLSSLRATAVVRIMTKNKGVNPSRIIVQGLADTQPRFQNDTPEHRQKNRRIEII 260

Query: 470 V 470
           +
Sbjct: 261 L 261