Pairwise Alignments

Query, 1159 a.a., IcmF family protein from Agrobacterium fabrum C58

Subject, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

 Score =  335 bits (858), Expect = 2e-95
 Identities = 295/1179 (25%), Positives = 505/1179 (42%), Gaps = 90/1179 (7%)

Query: 32   IALCVVVWFYGYLIALGDFKPLGTVQARLIAIGII----VAVWLVYI---IVTIYRGRKQ 84
            I L V +W+ G  + +  +KPL ++ AR++A  +     +AVW ++    +      +K+
Sbjct: 29   ILLNVAIWWAGPWLEVAGYKPLESIMARVVASSLFTLGCLAVWGIWQWRKLQAFKSEQKR 88

Query: 85   DKELVDSIEREALANRQAEIGEIQTRLKEALALLRRVTKKRFGYIYDLPWYVIFGAPGSG 144
            +++L     +     ++ E+ ++   +K++L         +  Y+Y LPWY++ G   +G
Sbjct: 89   EEQLRQDPIKVYEQRQEVELNQVMLNMKQSL--------NKHNYLYALPWYLVLGLENAG 140

Query: 145  KTTALTNSGLQFPLGDALGENAVKGIGGTRNCNWWFADEAILIDTAGRYTTQ----DDLD 200
            KT+ +  SG  F     +  +  K      + +WW  DE++LID  G   TQ    ++ D
Sbjct: 141  KTSLINRSGQNFVFSSVMRASGQKS-ENPYSFDWWIGDESVLIDPDGELLTQGNRSEEND 199

Query: 201  GS-SKAGWEGFLGLLRRYRRSQPINGALVTLSIPDLLNRDPEEQRQELRSIRQRLSELDE 259
            G+  +  W  F+  L R R  +P+NG ++ L +  L      E++     +R RL EL E
Sbjct: 200  GALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERKAYANLLRARLRELME 259

Query: 260  YLHARVPVYIVLTKADLLHGFVEFFDGFNKTDRQQVWGTTFKLDESYSAENLPQRLTEEF 319
             L  R+PVYI LTK DLLHGF  FF  + K+ R++V G TF +D   + ++  +    E+
Sbjct: 260  TLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDSVDNLDSWLEEFASEY 319

Query: 320  ELLQQRVDAMLIERLQQEQNAEIRGRIFRFPAELARLKDRLHEALAELCASSPLIEAPLL 379
                 RV+ ML   +      E R  I+ F  +++ LK+ L +   E  AS     + L+
Sbjct: 320  TQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKEILQQFFQEALASDQFSTSALV 379

Query: 380  RGVYFASGTQ---PETEKSPAASR---------------TRRSYFLSRLFKDVIFPEAAL 421
            RG YF S  Q   P      AASR                   YF  +LF  +I+PEA L
Sbjct: 380  RGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINTAQRAKNSTVYFTQKLFTHIIYPEAGL 439

Query: 422  VTRDKRLSRRQLLVRRIAYAVSATAVAIVFTGWIFTYFANTQALAEADRKLGAYEQLVQG 481
             + + R+++ +  +  +++   + A  ++   W   Y  N Q    AD  L    Q  + 
Sbjct: 440  ASDNFRVAKNKRRLMGLSFVACSVATLLLAGTWHRNYLNNVQ---HADTVLTKVNQYKEQ 496

Query: 482  IPVREVADADFLRILPALDNLRD--VNSGFARERVWNVS-FGLDQEDKIAGRQRDAYQRA 538
             P    + A    +L  L+ +R+  +  GF R++   +S FGL Q   I  +  + Y   
Sbjct: 497  FPTSR-SLASQREVLDPLNKIREATLEFGFFRDKPQYISDFGLYQGHTIGPKVEETYLNL 555

Query: 539  LNALLLPRMIVQLQKQLKDEKDVTRTFNSLKLYGMLGGMGGLDRDFLTTQTHQMFASLYP 598
            L    LP ++      L   +        L++Y ML    G  +D++     + +   + 
Sbjct: 556  LETRFLPLLMADTIVALNQAETDEEKLAVLRVYRMLVDKSGRYQDYVMDYFAKYWQKSFS 615

Query: 599  GDGRAA---------AREALDQHAKAL-----ADGVLAPIELDARLIATARETIRDQAIG 644
            G  +           A    D  A+ L     A+ V+ P +   ++IA A+  +      
Sbjct: 616  GQRQIQEELLGHLDYAMRHTDLTAERLNGDKGAEQVMRPYD---KVIARAQVELGSMPND 672

Query: 645  TRAYDILAGLPQVRELMEWTPATAFGPLGERAFERRSKAPMAEGIEGLFTADGYRRVVIP 704
             R Y  L    Q          +  GP+ +  FE R     +  I  + T  G+    +P
Sbjct: 673  QRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLFIPQMLTKRGFDDYFMP 732

Query: 705  QVAHAARVALSEGWVRGSDDAIKGATVEQVA--QAALQIYFDRFEKIWADTLSDLRVKPS 762
            Q    + +AL + WV G     + +  ++ A  +    +Y   +   W   L+++ VK  
Sbjct: 733  QSESVSELALIDSWVLGQSKTAQFSEADKQALREKIRDLYVADYTNTWRAALNEIDVKYF 792

Query: 763  QSLGDAVETTRALANERNIVVEAARSIAEATDLRPGANPAALASAAEGDATAAVLAATVN 822
              + DAV     + +    +    R++ + T L   A P   ++  E   +     A++ 
Sbjct: 793  NDINDAVMVLENITSNLEPMQRLLRTLDDNTQLY-SALPKDESALKELLKSPKYKVASM- 850

Query: 823  AADPYARLRDMLATKGAATTGEQPNGDKTGGSPSEQLLAHFKLLNEQLARSATTSDEVAK 882
               P+A L  ML          +P G K   +   ++LA    L   L       D    
Sbjct: 851  IETPFADLNGML----------KPVGSKP--AYMTEVLASVDELKSYLKSIQDAPDVGMA 898

Query: 883  VFDVDSQLTK-ANQD----LLQQARELPAPLDVWVAGVAADVGSLAVKSARSRIAELWTA 937
              D      K  N D    L + +  LP PLD  +A +A +   +  + A   +   WT 
Sbjct: 899  ALDATKARVKLVNADPIYTLKRISSGLPKPLDSMMAKLADESWYVVKQEAIKHLEVRWTE 958

Query: 938  DSASLCSSIVTGRYPFDRASSRDVAIADFTRLFAPTGVFQSFFKQRMEPFVDKTTTPWSW 997
            D      S + GRYPF+ AS++DVA+ADF   FAP G   +F+ Q+++ F+D+  +  S 
Sbjct: 959  DVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQQLKMFIDENISVAS- 1017

Query: 998  KGTFGAAGIPSSAVAQFENADKISRAFFPNGSETPTVSINVKPVSLTNASSAVMLEIEGE 1057
                  + I    + Q + A KI  AFF N      VS +V+P+SL+N     +L ++G+
Sbjct: 1018 -DDSAQSIIRKEVLDQIKQAQKIREAFF-NRKGILDVSFSVEPLSLSNNKRRSVLNVDGQ 1075

Query: 1058 RVVYYHGPIQAKSITWPSRENTASLSRIAFQPGGWQQAKTE---NGDWSPFRLFDGANIE 1114
             + Y HGP +   + WP+    +++S++   P     +       G W+ FRL D  ++ 
Sbjct: 1076 FLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQIQGPWAFFRLLDQGDVV 1135

Query: 1115 NQSGELLRVRFENGVQAAEFDIQFGSVLNPFKLDAIASF 1153
            + S   +  +F        + I   +  NPF      SF
Sbjct: 1136 SASQTSVDFKFIVDGGEMIYRINAEADANPFTERLFKSF 1174