Pairwise Alignments

Query, 325 a.a., ribose ABC transporter permease from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  286 bits (731), Expect = 6e-82
 Identities = 146/295 (49%), Positives = 204/295 (69%), Gaps = 5/295 (1%)

Query: 30  LAGLIVVSILMGLASDNFFSVNNIMNVLRQVSVVGILAVGMTFVILTGGIDLSVGAVMAL 89
           L  L+ + +++   + NFF+V+N++N+LRQ SV  I+AVGMT VILT GIDLSVG+V+AL
Sbjct: 35  LIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLAL 94

Query: 90  VGTLSAGLMVNTGLSPAIALPAGLFIGLGIGIFNGALVAWGRMPAIIVTLATMGMARGLG 149
            G  +A L V   +   +A+P  L  G  +G  +G ++A G++ A I TL TM + RG+ 
Sbjct: 95  CGAFAATL-VAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVT 153

Query: 150 LIYSGGYPVS----GIPSWISWFGVGRVGIVPVPVIIMVVIYAVAWVLLQRTAFGRHVYA 205
           ++Y+ G P+S          +WFG G    +PVPV +MVV++A AW LL  T FGR+VYA
Sbjct: 154 MVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTRFGRYVYA 213

Query: 206 LGGNELAARLSGVKTRRVKLAVYGISGVTAAFAALILTGRLMSGQPNAGVGFELDAIAAV 265
           +GGNE A RLSG+   RVK+ VY I G+ AA A +I+T RL S QP AG+G+ELDAIAAV
Sbjct: 214 VGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAV 273

Query: 266 VLGGTAIAGGRGLILGTLIGAVLLGILNNGLNLMGINPYLQDVIKGGIILLAIYI 320
           VLGGT++ GG+G I+GTLIGA+++G LNN LNL+ ++ Y Q + K  +ILLA+ +
Sbjct: 274 VLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLV 328