Pairwise Alignments

Query, 303 a.a., ribose ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score =  132 bits (333), Expect = 7e-36
 Identities = 85/295 (28%), Positives = 159/295 (53%), Gaps = 5/295 (1%)

Query: 1   MKMKSKFLMATAAIAMMAAPALAQEKLKIGMTFQELNNPYFVSMQEALKEAAASIGADVV 60
           M+MK    + +AA+   +   +AQ +  + +    LNNP+FV+M++  +  A  +G +++
Sbjct: 1   MRMKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLI 60

Query: 61  VTDAGHDVAKQISDVEDMLQQKIDILLLNPTDSAGIEAAVHAAKAAGVIVVAVDANAN-G 119
           V D+ +D +K++S+VED+  + +  +L+NPTDS  +  A+  A  + + V+ +D  A+ G
Sbjct: 61  VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120

Query: 120 PVDTFVGSKNRDAGYKSCKHLGDALGGKGEVAILDGIP-VVPILQRVEGCKAALAEFADI 178
            V + + S N   G  +   +   +G   +V  L+GI       +R EG   A+ + + +
Sbjct: 121 EVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAV-KGSKM 179

Query: 179 KLVDTQNGRQDRSVALGVVENMIQSRPNLAGIFSVNDGGAMGALAAIQGSGKDIKLTSVD 238
           +L+ +Q    DR+  L V+EN++ + P++  +F+ ND  A+GAL AIQ SGK + +   D
Sbjct: 180 QLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKSVMIVGFD 239

Query: 239 GAPEAVKAIADGGPFIETTAQFPRDQVRVGLAMALAQKWGARVVPKEVPIDVMVV 293
           G  + + A+ + G    T AQ P     +G+  A     G + V   +P+ + V+
Sbjct: 240 GTDDGIAAV-ERGQLAATVAQQPDMIGAIGIETADKMLKGEK-VEAYIPVALKVI 292