Pairwise Alignments
Query, 880 a.a., two component sensor kinase from Agrobacterium fabrum C58
Subject, 1229 a.a., two-component sensor histidine kinase from Sinorhizobium meliloti 1021
Score = 605 bits (1559), Expect = e-177
Identities = 312/574 (54%), Positives = 401/574 (69%), Gaps = 8/574 (1%)
Query: 306 IHPDDSDRAAETLRRCLRTGEHWNCEYRAARADGSYVWHRAAARPTRDEQGRITGWYGTA 365
+HPDD R + L + TGE ++ +YR RADG Y W +A P RDE+GRI WYG +
Sbjct: 658 VHPDDKTRMSNALFHSVATGERFSMKYRLRRADGVYRWVEGSAEPMRDEEGRILQWYGLS 717
Query: 366 LDIDVYKRTEAALRERERQLQQLIDTVPALIWSTMADGAPAYVNRQFTE---VTGATLED 422
DID E ALR ++QL+Q+I+ VP S G YV++++ + GA ++D
Sbjct: 718 HDIDDIMHVEEALRNSKQQLEQMIEAVPFSTLSFAPTGELTYVSKRYQDQAGAPGAEIKD 777
Query: 423 MTAPNGSPSLGVVHPEDRAAAREAFLRSVEAGIPYLQRYRQLRAGGSYRWTETRAEPLRD 482
A + V HP+D + G P++ R+R+ G+YRW E RA+PLR
Sbjct: 778 FDAL----AREVAHPDDFPTMFARATQGFATGQPFVNRFRRRLKDGNYRWIEARAQPLRR 833
Query: 483 DTGTIIYWYGVSSDIHDLITTQEALRESERHLQQLVETLPALIYCALPDGKPIYRSQRLR 542
G I+ WY S DI + + QEALRE ER L QLVETLPA+I CA P+G+P+YRSQ+LR
Sbjct: 834 ADGPIVQWYFASIDIEEEMRAQEALRERERFLWQLVETLPAMIDCAAPNGEPVYRSQQLR 893
Query: 543 QYLGFNLEDTDGFGKSRLDGTLDAVIHPDDLAVVKEHYAHSLATGEPYLQRHRLRRFDGV 602
+LG+ LE+ DG KSRLD TLDA +HPDDLA VKE YA SL +GEPY ++HRLRRFDG
Sbjct: 894 DFLGYELEELDGGAKSRLDATLDAGVHPDDLAGVKEQYARSLESGEPYRRKHRLRRFDGE 953
Query: 603 YRWVETRASAMRNGDGEIAQWNGICLDIEDQVQAQEELSRAHENLARSSQAASLAELSAS 662
YRW+ETRA+ MR+ G I QWN ICLD++ +V+ QEEL A E LAR+ QAASLAELSAS
Sbjct: 954 YRWIETRAAPMRDEKGAIVQWNVICLDVDREVRMQEELRLAQERLARAGQAASLAELSAS 1013
Query: 663 IAHEVNQPLSAVMNYSSACQRWLTAEPPNIERAQKTLERIVQSANSAADVVSRIRALFRQ 722
IAHEVNQPL+A++ S AC RWL+A+P NIERA+ T ER+++ A SAADVVSRIRALF+Q
Sbjct: 1014 IAHEVNQPLAAIVANSHACYRWLSADPVNIERAKITTERVIRDAKSAADVVSRIRALFKQ 1073
Query: 723 STDKRDSTELGAVVRQARDLLAEEAGRRRIRMTVEGESGLLLVPFDRVQIQQVLVNLLRN 782
S + R L V+ +A L+A EA RRRIR+ ++ E+ L V DR+Q+QQVLVNL+RN
Sbjct: 1074 SVENRGILVLSDVISEACSLVAAEALRRRIRLNIDVETNLAPVTVDRIQVQQVLVNLIRN 1133
Query: 783 GMDAMASVANERVLQVRAFRAGDMVRIEVADRGRGVQFPDRIFEPFFTTKDQGMGMGLAI 842
GM+AM +V + + + VR + D VRIE+ D G GV FP+RIFEPFFTTK+ GMGMGLAI
Sbjct: 1134 GMEAMDAVDDNKTVDVRMHQVDDEVRIEIGDNGNGVAFPERIFEPFFTTKENGMGMGLAI 1193
Query: 843 CRSIIEAHEGQLWAEKNEPIGSKFVFTLPLDIAK 876
RSI+EAH G+LWAEKNEP G++FVFTLP ++AK
Sbjct: 1194 SRSIVEAHGGRLWAEKNEPRGARFVFTLP-NVAK 1226
Score = 221 bits (564), Expect = 2e-61
Identities = 160/508 (31%), Positives = 241/508 (47%), Gaps = 54/508 (10%)
Query: 169 VHPHDRAAIEQAAARAFFHGIPQITRYRELQADGSYRQVELRLEP---ENG-------VS 218
VHP D ++ QA R+ G P +YR +ADG+YR V+ R EP ++G +S
Sbjct: 369 VHPDDADSLLQAVRRSLATGEPYSIKYRMRRADGAYRWVDGRAEPLRDDSGTILQWFAIS 428
Query: 219 AEVDPAMTRQDEPWMRASSFGETRNAVQAALA------IEKLYGDAWAIDAIGQFTYA-- 270
++D + Q+ + E + + LA + ++ + A + TY
Sbjct: 429 IDIDDEVRMQEALKQSERRYRELFHYMPIGLAQIDAGKLIPMFKEMRAQGVVSLETYMDE 488
Query: 271 TPASQNSVARALD--DLNALLDD------KPFLGGG-RQGWQRGIHPDDSDRAAETLRRC 321
P + AL+ ++N + D + +GG + WQ A T+RR
Sbjct: 489 NPEFLSHALEALEVEEVNQHVIDMFRANSREEMGGSITRYWQP---------ALATIRRS 539
Query: 322 L----RTGEHWNCEYRAARADGSYV-WHRAAARPTRDEQGRITGWYGTALDIDVYKRTEA 376
+ R E + E R AR DGS + A A+P + G+ +DI KR E
Sbjct: 540 IEARYRGEEVFQEETRVARMDGSVMDVVFAIAQPGAIADKSLVGF----IDITERKRAEE 595
Query: 377 ALRERERQLQQLIDTVPALIWSTMADGAPAYVNRQFTEVTGATLEDMTAPNGSPSLG--- 433
ALR RER+ QL++ VP+ +W DG P ++N++ + G + + P
Sbjct: 596 ALRAREREFSQLVNMVPSYLWRLTPDGVPNFLNQRLIDFLGPDVVNANVEGVHPLAAIIG 655
Query: 434 -VVHPEDRAAAREAFLRSVEAGIPYLQRYRQLRAGGSYRWTETRAEPLRDDTGTIIYWYG 492
VVHP+D+ A SV G + +YR RA G YRW E AEP+RD+ G I+ WYG
Sbjct: 656 AVVHPDDKTRMSNALFHSVATGERFSMKYRLRRADGVYRWVEGSAEPMRDEEGRILQWYG 715
Query: 493 VSSDIHDLITTQEALRESERHLQQLVETLPALIYCALPDGKPIYRSQRLRQYLGFNLEDT 552
+S DI D++ +EALR S++ L+Q++E +P P G+ Y S+R + G
Sbjct: 716 LSHDIDDIMHVEEALRNSKQQLEQMIEAVPFSTLSFAPTGELTYVSKRYQDQAG-----A 770
Query: 553 DGFGKSRLDGTLDAVIHPDDLAVVKEHYAHSLATGEPYLQRHRLRRFDGVYRWVETRASA 612
G D V HPDD + ATG+P++ R R R DG YRW+E RA
Sbjct: 771 PGAEIKDFDALAREVAHPDDFPTMFARATQGFATGQPFVNRFRRRLKDGNYRWIEARAQP 830
Query: 613 MRNGDGEIAQWNGICLDIEDQVQAQEEL 640
+R DG I QW +DIE++++AQE L
Sbjct: 831 LRRADGPIVQWYFASIDIEEEMRAQEAL 858
Score = 179 bits (454), Expect = 9e-49
Identities = 120/392 (30%), Positives = 181/392 (46%), Gaps = 47/392 (11%)
Query: 306 IHPDDSDRAAETLRRCLRTGEHWNCEYRAARADGSYVWHRAAARPTRDEQGRITGWYGTA 365
+HPDD+D + +RR L TGE ++ +YR RADG+Y W A P RD+ G I W+ +
Sbjct: 369 VHPDDADSLLQAVRRSLATGEPYSIKYRMRRADGAYRWVDGRAEPLRDDSGTILQWFAIS 428
Query: 366 LDIDVYKRTEAALRERERQLQQLIDTVP----------------------ALIWSTMADG 403
+DID R + AL++ ER+ ++L +P + T D
Sbjct: 429 IDIDDEVRMQEALKQSERRYRELFHYMPIGLAQIDAGKLIPMFKEMRAQGVVSLETYMDE 488
Query: 404 APAYVNRQF----TEVTGATLEDMTAPNGSPSLGVVHPEDRAAAREAFLRSVEAGIPYLQ 459
P +++ E + DM N +G A RS+EA
Sbjct: 489 NPEFLSHALEALEVEEVNQHVIDMFRANSREEMGGSITRYWQPALATIRRSIEA------ 542
Query: 460 RYRQLRAGGSYRWTETRAEPLRDDTGTIIYWYGVSS-----------DIHDLITTQEALR 508
RYR G ETR + +++ DI + +EALR
Sbjct: 543 RYR----GEEVFQEETRVARMDGSVMDVVFAIAQPGAIADKSLVGFIDITERKRAEEALR 598
Query: 509 ESERHLQQLVETLPALIYCALPDGKPIYRSQRLRQYLGFNLEDTDGFGKSRLDGTLDAVI 568
ER QLV +P+ ++ PDG P + +QRL +LG ++ + + G L + AV+
Sbjct: 599 AREREFSQLVNMVPSYLWRLTPDGVPNFLNQRLIDFLGPDVVNANVEGVHPLAAIIGAVV 658
Query: 569 HPDDLAVVKEHYAHSLATGEPYLQRHRLRRFDGVYRWVETRASAMRNGDGEIAQWNGICL 628
HPDD + HS+ATGE + ++RLRR DGVYRWVE A MR+ +G I QW G+
Sbjct: 659 HPDDKTRMSNALFHSVATGERFSMKYRLRRADGVYRWVEGSAEPMRDEEGRILQWYGLSH 718
Query: 629 DIEDQVQAQEELSRAHENLARSSQAASLAELS 660
DI+D + +E L + + L + +A + LS
Sbjct: 719 DIDDIMHVEEALRNSKQQLEQMIEAVPFSTLS 750
Score = 157 bits (396), Expect = 5e-42
Identities = 113/365 (30%), Positives = 167/365 (45%), Gaps = 43/365 (11%)
Query: 169 VHPHDRAAIEQAAARAFFHGIPQITRYRELQADGSYRQVELRLEPEN----------GVS 218
VHP D+ + A + G +YR +ADG YR VE EP G+S
Sbjct: 658 VHPDDKTRMSNALFHSVATGERFSMKYRLRRADGVYRWVEGSAEPMRDEEGRILQWYGLS 717
Query: 219 AEVDPAMTRQDEPWMRASSFGETRNAVQAALAIEKLYGDAWAIDAIGQFTYATPASQNSV 278
++D M E +R S Q IE + + G+ TY + Q+
Sbjct: 718 HDIDDIM--HVEEALRNSK-------QQLEQMIEAVPFSTLSFAPTGELTYVSKRYQDQA 768
Query: 279 ---ARALDDLNALLDDKPFLGGGRQGWQRGIHPDDSDRAAETLRRCLRTGEHWNCEYRAA 335
+ D +AL + HPDD + TG+ + +R
Sbjct: 769 GAPGAEIKDFDALA-------------REVAHPDDFPTMFARATQGFATGQPFVNRFRRR 815
Query: 336 RADGSYVWHRAAARPTRDEQGRITGWYGTALDIDVYKRTEAALRERERQLQQLIDTVPAL 395
DG+Y W A A+P R G I WY ++DI+ R + ALRERER L QL++T+PA+
Sbjct: 816 LKDGNYRWIEARAQPLRRADGPIVQWYFASIDIEEEMRAQEALRERERFLWQLVETLPAM 875
Query: 396 IWSTMADGAPAYVNRQFTEVTGATLEDMTAPNGSPSL------GVVHPEDRAAAREAFLR 449
I +G P Y ++Q + G LE++ G+ S VHP+D A +E + R
Sbjct: 876 IDCAAPNGEPVYRSQQLRDFLGYELEEL--DGGAKSRLDATLDAGVHPDDLAGVKEQYAR 933
Query: 450 SVEAGIPYLQRYRQLRAGGSYRWTETRAEPLRDDTGTIIYWYGVSSDIHDLITTQEALRE 509
S+E+G PY +++R R G YRW ETRA P+RD+ G I+ W + D+ + QE LR
Sbjct: 934 SLESGEPYRRKHRLRRFDGEYRWIETRAAPMRDEKGAIVQWNVICLDVDREVRMQEELRL 993
Query: 510 SERHL 514
++ L
Sbjct: 994 AQERL 998
Score = 130 bits (327), Expect = 5e-34
Identities = 64/155 (41%), Positives = 97/155 (62%), Gaps = 4/155 (2%)
Query: 372 KRTEAALRERERQLQQLIDTVPALIWSTMADGAPAYVNRQFTEVTGATLEDMTAPNGSPS 431
+++ A LRERER+L Q+++ VP I +G P + N++ T+ G L+ + PN S
Sbjct: 302 QQSVATLRERERELSQIVNMVPVHIRRLTPEGEPTFFNKRLTDFFGLDLQQLEKPNASRL 361
Query: 432 LG----VVHPEDRAAAREAFLRSVEAGIPYLQRYRQLRAGGSYRWTETRAEPLRDDTGTI 487
+ +VHP+D + +A RS+ G PY +YR RA G+YRW + RAEPLRDD+GTI
Sbjct: 362 VTAVQTLVHPDDADSLLQAVRRSLATGEPYSIKYRMRRADGAYRWVDGRAEPLRDDSGTI 421
Query: 488 IYWYGVSSDIHDLITTQEALRESERHLQQLVETLP 522
+ W+ +S DI D + QEAL++SER ++L +P
Sbjct: 422 LQWFAISIDIDDEVRMQEALKQSERRYRELFHYMP 456
Score = 115 bits (288), Expect = 2e-29
Identities = 56/137 (40%), Positives = 84/137 (61%)
Query: 507 LRESERHLQQLVETLPALIYCALPDGKPIYRSQRLRQYLGFNLEDTDGFGKSRLDGTLDA 566
LRE ER L Q+V +P I P+G+P + ++RL + G +L+ + SRL +
Sbjct: 308 LRERERELSQIVNMVPVHIRRLTPEGEPTFFNKRLTDFFGLDLQQLEKPNASRLVTAVQT 367
Query: 567 VIHPDDLAVVKEHYAHSLATGEPYLQRHRLRRFDGVYRWVETRASAMRNGDGEIAQWNGI 626
++HPDD + + SLATGEPY ++R+RR DG YRWV+ RA +R+ G I QW I
Sbjct: 368 LVHPDDADSLLQAVRRSLATGEPYSIKYRMRRADGAYRWVDGRAEPLRDDSGTILQWFAI 427
Query: 627 CLDIEDQVQAQEELSRA 643
+DI+D+V+ QE L ++
Sbjct: 428 SIDIDDEVRMQEALKQS 444
Score = 114 bits (285), Expect = 4e-29
Identities = 107/416 (25%), Positives = 161/416 (38%), Gaps = 75/416 (18%)
Query: 25 EAAKVVERIIGNAWAADANGNFIYVTPAALAFFGISLESLNSQSGES-AFGWKRVIHPED 83
E +++V + W +G ++ + F G + + N + A V+HP+D
Sbjct: 603 EFSQLVNMVPSYLWRLTPDGVPNFLNQRLIDFLGPDVVNANVEGVHPLAAIIGAVVHPDD 662
Query: 84 YESAAAAWRRCLRTGEHYNVEHRMLRATGVYGWARSTGQPIRDGNGVILGWYGTVIDI-- 141
+ A + TGE +++++R+ RA GVY W + +P+RD G IL WYG DI
Sbjct: 663 KTRMSNALFHSVATGERFSMKYRLRRADGVYRWVEGSAEPMRDEEGRILQWYGLSHDIDD 722
Query: 142 ------ALASR-------------------------------EDNRDDPSAGRTPQDILR 164
AL + +D P A D L
Sbjct: 723 IMHVEEALRNSKQQLEQMIEAVPFSTLSFAPTGELTYVSKRYQDQAGAPGAEIKDFDAL- 781
Query: 165 SMDTVHPHDRAAIEQAAARAFFHGIPQITRYRELQADGSYRQVELRLEPENGVSAEVDPA 224
+ + HP D + A + F G P + R+R DG+YR +E R +P
Sbjct: 782 AREVAHPDDFPTMFARATQGFATGQPFVNRFRRRLKDGNYRWIEARAQP----------- 830
Query: 225 MTRQDEP---WMRASSFGETRNAVQAALAIEKLYGDAWAIDAIGQFTYATPASQNSVARA 281
+ R D P W AS E Q AL + + + Q PA + A
Sbjct: 831 LRRADGPIVQWYFASIDIEEEMRAQEALRERERF--------LWQLVETLPAMIDCAAPN 882
Query: 282 LDDLNALLDDKPFLG-------GGRQG-----WQRGIHPDDSDRAAETLRRCLRTGEHWN 329
+ + + FLG GG + G+HPDD E R L +GE +
Sbjct: 883 GEPVYRSQQLRDFLGYELEELDGGAKSRLDATLDAGVHPDDLAGVKEQYARSLESGEPYR 942
Query: 330 CEYRAARADGSYVWHRAAARPTRDEQGRITGWYGTALDIDVYKRTEAALRERERQL 385
++R R DG Y W A P RDE+G I W LD+D R + LR + +L
Sbjct: 943 RKHRLRRFDGEYRWIETRAAPMRDEKGAIVQWNVICLDVDREVRMQEELRLAQERL 998
Score = 72.0 bits (175), Expect = 2e-16
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 56 FFGISLESLNSQSGESAF-GWKRVIHPEDYESAAAAWRRCLRTGEHYNVEHRMLRATGVY 114
FFG+ L+ L + + ++HP+D +S A RR L TGE Y++++RM RA G Y
Sbjct: 345 FFGLDLQQLEKPNASRLVTAVQTLVHPDDADSLLQAVRRSLATGEPYSIKYRMRRADGAY 404
Query: 115 GWARSTGQPIRDGNGVILGWYGTVIDI 141
W +P+RD +G IL W+ IDI
Sbjct: 405 RWVDGRAEPLRDDSGTILQWFAISIDI 431