Pairwise Alignments

Query, 496 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 41/178 (23%), Positives = 90/178 (50%), Gaps = 7/178 (3%)

Query: 107 REARLLQDIVVG----VVYVCVTLSALAFVFGVPVGTLVATSGVIAIALGLALQNTLGDV 162
           R + L+QD  V     VV+V   L  L+ + G+ +  ++   G+  + +G ALQ+TL + 
Sbjct: 336 RISHLMQDFFVSMSGKVVWVIGILVGLSQI-GLNLAPVLTGFGIAGVIIGFALQDTLSNF 394

Query: 163 FSGVALNLGHTYALGDWILLEDGTEGRVIASTWRSTQILTGANNIVVLPNSVLAKLKLTN 222
            +G+ L +   + +GD++    G +G+V   +  +T I T  N I+++PNS +    + N
Sbjct: 395 AAGMMLLIYRPFDVGDFV-HAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNSKIWGDVIKN 453

Query: 223 VSRPDETHLLKMTVRLVPTHAPSMIEEAMTTVLAGCNSIMREPPPLVSMSGLDATALE 280
           V+  +    + M   +  +      E  +T ++    ++++ P P + +  L+ ++++
Sbjct: 454 VTH-ERIRRVDMVFGIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSID 510