Pairwise Alignments

Query, 511 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  548 bits (1413), Expect = e-160
 Identities = 278/509 (54%), Positives = 377/509 (74%), Gaps = 3/509 (0%)

Query: 1   MNAVKGIDIDVKQGETLAVVGESGSGKSQTMMGIMGLLASNGII--EGSAKYRGHELIGL 58
           ++AVK +  D++ GETLA+VGESGSGKS +   +M LL  N  I  E S  + G EL+  
Sbjct: 23  VDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNARIHPESSIMFEGEELLNK 82

Query: 59  PVNELNDIRGAKITMIFQEPMTSLDPLYRIGAQIAEPIIYHRGGSKRQARARVLELLKLV 118
              ++  IRG +I MIFQEPMTSL+P  R+G Q+AE I  HR  S+ QA+ RVLEL +LV
Sbjct: 83  TDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHRNVSQNQAKQRVLELFQLV 142

Query: 119 GIPEPERRIDSYPHELSGGQRQRVMIAMALANEPDILIADEPTTALDVTIQAQILDLLKS 178
            +P+P+     +PHE SGGQ QR+MIAMAL NEPDILIADEPTTALDVT+QA++L L+K 
Sbjct: 143 HLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEPTTALDVTVQAEVLRLIKE 202

Query: 179 LQQRFGMAVVLITHDLGVVRHFANRVAVMRRGEIVETGTTEDIFERPQADYTKMLLDAEP 238
           +Q   GMA++ ITHDLGVV+  A+RV VM +G++VE G+TE +F +P+ DYT+ML+++ P
Sbjct: 203 IQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQLFLQPEHDYTRMLINSIP 262

Query: 239 SGHKPAVGSEAPVVLSGKNVTIDYKIPGGFLSKSSK-FRAVDSVNVDLHQGQTIGIVGES 297
            G K  V  +A  +L  +++ + + +   F+S+ ++ F AV  ++++L QG+T+GIVGES
Sbjct: 263 KGSKDPVAVDAAPLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGES 322

Query: 298 GSGKSTLGRALLRLIVSEGRIFFGKTEITGLDRKAMRPLRRHLQLVFQDPYGSLSPRQTV 357
           GSGKSTLGRAL+ L+ S G+I F   +   L  K    L++ +Q+VFQDPYGSLSPR TV
Sbjct: 323 GSGKSTLGRALIGLLPSTGQIAFKGQDFRALSEKQRLALKKDIQMVFQDPYGSLSPRMTV 382

Query: 358 GEIITEGLFVHEQQLSRAERDKRAIEALKEVGLDPAARNRYPHEFSGGQRQRIAIARAII 417
           GEIITEGL VH+  +S+ ER +RA  AL+EV LDP + NRYPHEFSGGQRQRIAIARA+I
Sbjct: 383 GEIITEGLLVHQPHISKLERMQRARRALEEVRLDPNSINRYPHEFSGGQRQRIAIARALI 442

Query: 418 LKPEVVILDEPTSALDRSVQGQVIDLLRDLQKAHGLSYIFISHDLSVIKAISDYVIVMRN 477
           L+P  ++LDEPTSALDRSVQ  VI+LL+++QK   + Y+FISHDL+V+KA+SD V+VM+ 
Sbjct: 443 LEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQK 502

Query: 478 GKIVEEGETDAIFSRPTAEYTKTLIKSAF 506
           G+++E+G  ++IF  P  EYTK LI ++F
Sbjct: 503 GQVMEQGSAESIFHNPQHEYTKKLIAASF 531



 Score =  174 bits (440), Expect = 9e-48
 Identities = 99/262 (37%), Positives = 161/262 (61%), Gaps = 16/262 (6%)

Query: 252 VLSGKNVTIDYKIPGGFLSKSSKFRAVDSVNVDLHQGQTIGIVGESGSGKSTLGRALLRL 311
           +L  +N+++ +    G +       AV +V+ D+  G+T+ IVGESGSGKS    AL++L
Sbjct: 6   LLQVRNLSVSFTTNDGVVD------AVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQL 59

Query: 312 IVSEGRI-------FFGKTEITGLDRKAMRPLRRHLQLVFQDPYGSLSPRQTVGEIITEG 364
           +    RI       F G+  +   D +  R     + ++FQ+P  SL+P   VG  + E 
Sbjct: 60  LPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEA 119

Query: 365 LFVHEQQLSRAERDKRAIEALKEVGL-DP-AARNRYPHEFSGGQRQRIAIARAIILKPEV 422
           +  H + +S+ +  +R +E  + V L DP  A  ++PHEFSGGQ QRI IA A+I +P++
Sbjct: 120 IRCH-RNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDI 178

Query: 423 VILDEPTSALDRSVQGQVIDLLRDLQKAHGLSYIFISHDLSVIKAISDYVIVMRNGKIVE 482
           +I DEPT+ALD +VQ +V+ L++++Q   G++ +FI+HDL V+K ++D V+VM  G +VE
Sbjct: 179 LIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVE 238

Query: 483 EGETDAIFSRPTAEYTKTLIKS 504
           +G T+ +F +P  +YT+ LI S
Sbjct: 239 QGSTEQLFLQPEHDYTRMLINS 260