Pairwise Alignments
Query, 511 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58
Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056
Score = 403 bits (1036), Expect = e-117
Identities = 233/536 (43%), Positives = 337/536 (62%), Gaps = 38/536 (7%)
Query: 3 AVKGIDIDVKQGETLAVVGESGSGKSQTMMGIMGLLASNGIIEGSAKY-RGHELIGLPVN 61
AVK + +D+++GE + VVGESG+GKS ++ LL+ G I G Y G ++ GL
Sbjct: 22 AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGTIAGGEVYLNGEKISGLSPQ 81
Query: 62 ELNDIRGAKITMIFQEPMTSLDPLYRIGAQIAEPIIYHRGGSKRQARARVLELLKLVGIP 121
+ ++RG+KI IFQ+PMTSL+PL+ + Q+ E I + S +A R L L+K VGIP
Sbjct: 82 AMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQVSAEEAYQRALSLMKQVGIP 141
Query: 122 EPERRIDSYPHELSGGQRQRVMIAMALANEPDILIADEPTTALDVTIQAQILDLLKSLQQ 181
+PE R+ YPH+ SGG RQRV+IA+ALA EPD++IADEPTTALDV+IQ QIL+L++ L +
Sbjct: 142 QPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTALDVSIQDQILNLIRELCK 201
Query: 182 RFGMAVVLITHDLGVVRHFANRVAVMRRGEIVETGTTEDIFERPQADYTKMLLDAEPSGH 241
+ + +L+THD+GVV + +RVAVM RG++VE G T + P+ YT+ L+ A P
Sbjct: 202 KNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLGTPEHPYTRSLISAVPRSD 261
Query: 242 K-----PAVG--SEAP-----------------------VVLSGKNVTIDYKIPGG-FLS 270
+ P V EA +L +NV + + F S
Sbjct: 262 RKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGPLLKVENVNLRFVTKDSLFES 321
Query: 271 KSSKFRAVDSVNVDLHQGQTIGIVGESGSGKSTLGRALLRLI-VSEGRIFFGKTEITGL- 328
+ +A ++V+ +H+G+T G+VGESGSGKST+ R + L + GR+ F ++T L
Sbjct: 322 RREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPNAGRVTFEGIDLTALK 381
Query: 329 DRKAMRPLRRHLQLVFQDPYGSLSPRQTVGEIITEGLFVHEQQLSRAERDKRAI--EALK 386
RPLRR +Q+VFQ+PY S++PR + +II E + H +L+R+E + R I + L+
Sbjct: 382 SEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFH--KLTRSESETRQIVNDLLE 439
Query: 387 EVGLDPAARNRYPHEFSGGQRQRIAIARAIILKPEVVILDEPTSALDRSVQGQVIDLLRD 446
VGL A +YPHEFSGGQRQRI+IARA+ +P ++I DEPTSALD SVQ Q+++LL+D
Sbjct: 440 HVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKD 499
Query: 447 LQKAHGLSYIFISHDLSVIKAISDYVIVMRNGKIVEEGETDAIFSRPTAEYTKTLI 502
LQ L+ +FISHDL VI+ + D V VM+ G ++E T+ +F+ P EY+K LI
Sbjct: 500 LQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLI 555
Score = 179 bits (454), Expect = 2e-49
Identities = 100/262 (38%), Positives = 164/262 (62%), Gaps = 17/262 (6%)
Query: 252 VLSGKNVTIDYKIPGGFLSKSSKFRAVDSVNVDLHQGQTIGIVGESGSGKSTLGRALLRL 311
+L KN+ I+Y S+ AV S+ +D+ +G+ +G+VGESG+GKST+G A++ L
Sbjct: 3 LLEVKNLRIEYP------SRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDL 56
Query: 312 I-----VSEGRIFFGKTEITGLDRKAMRPLR-RHLQLVFQDPYGSLSPRQTVGEIITEGL 365
+ ++ G ++ +I+GL +AMR +R + +FQDP SL+P TV +TE +
Sbjct: 57 LSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETI 116
Query: 366 FVHEQQLSRAERDKRAIEALKEVGLDPAARNR---YPHEFSGGQRQRIAIARAIILKPEV 422
+ Q+S E +RA+ +K+VG+ P NR YPH+FSGG RQR+ IA A+ +P++
Sbjct: 117 HAN-MQVSAEEAYQRALSLMKQVGI-PQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDL 174
Query: 423 VILDEPTSALDRSVQGQVIDLLRDLQKAHGLSYIFISHDLSVIKAISDYVIVMRNGKIVE 482
+I DEPT+ALD S+Q Q+++L+R+L K + + + ++HD+ V+ ++D V VM G +VE
Sbjct: 175 IIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVE 234
Query: 483 EGETDAIFSRPTAEYTKTLIKS 504
G T + P YT++LI +
Sbjct: 235 FGPTAKVLGTPEHPYTRSLISA 256
Score = 174 bits (440), Expect = 1e-47
Identities = 101/239 (42%), Positives = 140/239 (58%), Gaps = 6/239 (2%)
Query: 1 MNAVKGIDIDVKQGETLAVVGESGSGKSQTMMGIMGLLASNGIIEGSAKYRGHELIGLPV 60
+ A + V +GET +VGESGSGKS I GL N G + G +L L
Sbjct: 326 VQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPNA---GRVTFEGIDLTALKS 382
Query: 61 NELNDIRGAKITMIFQEPMTSLDPLYRIGAQIAEPIIYHR-GGSKRQARARVLELLKLVG 119
++ M+FQ P TS++P +I IAEPI +H+ S+ + R V +LL+ VG
Sbjct: 383 EHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVG 442
Query: 120 IPEPERRIDSYPHELSGGQRQRVMIAMALANEPDILIADEPTTALDVTIQAQILDLLKSL 179
+ + YPHE SGGQRQR+ IA ALA P +LI DEPT+ALDV++QAQIL+LLK L
Sbjct: 443 LGKMAGL--KYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDL 500
Query: 180 QQRFGMAVVLITHDLGVVRHFANRVAVMRRGEIVETGTTEDIFERPQADYTKMLLDAEP 238
Q + ++ I+HDL V+R +RV VM+ G ++E TE +F PQ +Y+K L+ P
Sbjct: 501 QDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMP 559