Pairwise Alignments

Query, 419 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 458 a.a., carbohydrate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 45.4 bits (106), Expect = 3e-09
 Identities = 92/412 (22%), Positives = 153/412 (37%), Gaps = 72/412 (17%)

Query: 8   IAMTGFLVTSGLVSPALSQELRMAIWSANEAHLALFNEIADEFEASHPGVKITYDSLAYE 67
           I   G L++  L    ++ EL +  W A++  L    +I   FEA++PG+K+ ++ +   
Sbjct: 6   IGALGLLLSGQL----MASELVIESWRADDKAL-WEQKIIPAFEAANPGIKVKFNPVPNV 60

Query: 68  GYATTLTTQIAGGNPPDLAWLFDTTAPDFMAAGALYPLTETFANTQGYDMGDFPPATLAA 127
            Y  TL   +  G   DL      T   F  + AL+        T+   M +FP    A 
Sbjct: 61  NYTPTLWENLKAGKAGDL-----ITCRPFDDSLALFKAGHLAEITEMAGMENFPSFAQAP 115

Query: 128 WSYE-GTQ-YLYPFSTSPFGVFVNNDMIRAAGAKTPAEMIAAGDWNWDNAIATAAKVAAT 185
           W  + G Q +  P ++   G F N  +    G   P           +       KV A 
Sbjct: 116 WQTDSGAQTFCVPMASVIHGFFYNKKIFNELGLSVPQTR--------EQFFTVLDKVKAD 167

Query: 186 GKQGLIIRDFEYKAWENLAEVYTGWNAYPWSKDTKSCAFASPEMVDAMRFIHDAIFVK-- 243
           G+  + +     ++W      Y       W  +    A     +++    + D+ +VK  
Sbjct: 168 GRY-IPLSMSGSESWVASELGYQNIGPNYWKGEDGRLA-----LINGQEHLDDSQYVKVF 221

Query: 244 ------KAMPGP-------GVSADFF-AGDAAMTTTQISRAALLPKGDKAFDWDLVPLPT 289
                 +A  G        G S + F +G AA+         + P  DK  D+ ++  P 
Sbjct: 222 EELARWRAYLGEDGELRDYGTSNELFTSGKAALYVA--GSWEIAPFTDKV-DFGVMRPPV 278

Query: 290 GPAGD---YAVTGRAGIGVLASGKNPKLAAEFL----------AFFSSKPNVAKLARFF- 335
              GD   +      G+G+  + KNP+ A  FL           + +S P    L+  F 
Sbjct: 279 AKQGDGCFFTDHTDIGMGMNPASKNPQAAMAFLQWLTTPEFAELYTNSLPGFFSLSNHFF 338

Query: 336 ----PPARQSLLTAD----VLAAANPLLSRKQIE-----AVVIRGVATGQST 374
               P AR+ +   D     +  A  +LSR Q +     A V + V  G+ T
Sbjct: 339 DVTNPAAREMMEWRDQCDSTIRVATQILSRGQPKLGDELAEVSQAVLVGKMT 390