Pairwise Alignments

Query, 280 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 280 a.a., carbohydrate ABC transporter permease from Rahnella sp. WP5

 Score =  135 bits (341), Expect = 8e-37
 Identities = 77/261 (29%), Positives = 132/261 (50%), Gaps = 4/261 (1%)

Query: 21  LVPFVFPTWWMVTSSVKPVSQIFAFPPDIWPRTFDFSSYSDVFRIQPFALQYWNSAYIAA 80
           LV  +FP +W++  SV P   +++    +WP     + +  VF    F L ++NS  ++ 
Sbjct: 23  LVFALFPIYWLIKISVTPDKLLYSEGVRMWPGEMTLTHFQRVFTESQFPLYFFNSLIVSF 82

Query: 81  IVTIGTMAVASMAGYAFARIRFPFANAIFMVVLVGLLIPSEVTLVPLFRMFLKWGMINTH 140
                T  +A+ AG+AF+R  F     +  ++L   + P  + L P++++    G+ N+ 
Sbjct: 83  GTAFLTTIIAAGAGFAFSRFSFRGKTVMAALLLFTQMFPLVMILAPIYKVMAPLGLTNSL 142

Query: 141 WPLILV-PIFGAPAVFATFIMRQFFISLPVELEEAAWVDGLSRFKIFWTIALPLARPALA 199
             L+L+   F  P  FATF+M+ FF S+P +LEE+A ++G SRF     + +PL  P +A
Sbjct: 143 LGLVLIYTAFNVP--FATFLMQSFFDSIPKDLEESAMLEGCSRFMALRKVIIPLTLPGMA 200

Query: 200 AVAIFTFLGSWNLYLEPIVFLSSPDKFTLPQALTQFTDAYGGPMWNIQLAAATMTAIPVL 259
           A   F F  +W+  L  ++ ++  +  T P  L  F   +    W   +AAA +  IP  
Sbjct: 201 ATLGFVFTAAWSELLFSLMLINKNEVMTFPVGLLSFVSKF-AVSWGDMMAAAVLALIPAC 259

Query: 260 IVFIVAQKQFVEGLAHTGLKG 280
           + F   Q+  V+GL    +KG
Sbjct: 260 LFFAFIQRYLVQGLTAGAVKG 280