Pairwise Alignments

Query, 291 a.a., polyamine ABC transporter permease from Agrobacterium fabrum C58

Subject, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

 Score =  172 bits (437), Expect = 6e-48
 Identities = 90/253 (35%), Positives = 149/253 (58%), Gaps = 10/253 (3%)

Query: 34  LILFFVVPVLILLSRS--------VTEPVFGLGNYAELLGSSTYLKIFFNTFAVSALVTV 85
           L+LF ++P L+++  S        + +  F   NY  LL    Y K+  ++F ++ + T+
Sbjct: 20  LVLFVLIPNLMIIGTSFLTRDEANLIKFAFTFENYTRLL-DPLYGKVMLHSFYMAIVATL 78

Query: 86  VSLAIGFPVAWALAIMPSRLASIVFAILLLSMWTNLLARTYAWMVLLQRTGVVNKTLMGL 145
           + L IG+P A+ +A MP +    +  ++++  WTN L RTY   ++L   G++N+ LM L
Sbjct: 79  ICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRTYGLKIVLGTQGILNQALMSL 138

Query: 146 GIIDKPLALVNNLTGVTIGMTYIMLPFIIIPLYGVIRKIDPAILQAASLCGASRWQALTR 205
           G+ID PL ++   T V IG+ YI+LPF+I+PLY  I K+D   ++AA   GA+++Q L R
Sbjct: 139 GLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLDGTYIEAARDLGANKFQTLVR 198

Query: 206 VLIPLAAPGMMAGALMVFVMSLGYFVTPALLGGTANMMLAELIAQFVQSLVNWGMGGAAA 265
           V++PL  PG++ G L+V + +LG F    LLGG  N+++  +I   V +  +W  G A +
Sbjct: 199 VILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIGNVIKSQVLNARDWPFGAATS 258

Query: 266 FVL-LVVTLALYA 277
             L L + + LYA
Sbjct: 259 IALTLAMAIMLYA 271