Pairwise Alignments

Query, 394 a.a., tetracycline resistance protein from Agrobacterium fabrum C58

Subject, 390 a.a., drug resistance transporter, Bcr/CflA subfamily from Pseudomonas stutzeri RCH2

 Score = 63.2 bits (152), Expect = 1e-14
 Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 11/247 (4%)

Query: 4   ALIVILSTVALDAIGAGLIFPILPDILVEVTGGGDIGFLYGVMLGVFAVMQFVFSPILGA 63
           +L ++L   AL A G   I   LP   +     G       + L  + +   +   + G 
Sbjct: 2   SLRILLILGALSAFGPLAIDMYLPAFPLLAQSFGTSVDHVQLSLAAYFIGLAIGQLVYGP 61

Query: 64  LSDRFGRRPVLLLSLAGTLLDYLVMAFSP-LGWVLVVGRAMAGITSANMAVASAYITDIT 122
           L+DR+GRR  LL+ +    L  L  AF+P + W++ V    A    A M VA A + D+ 
Sbjct: 62  LADRYGRRGPLLIGVTLFTLASLASAFAPSMDWLIGVRFVQALGGCAGMVVARAVVRDLC 121

Query: 123 PAEQRAQRFGTVGAVMSLGFIIGPVIGG-VIGAWWLRAPFLVAALFNGLNLFVALFVLPE 181
                A+ F  +  VM L  I+ PV GG ++ ++   + F++  LF+ + L      LPE
Sbjct: 122 DPMTSAKVFSQLMLVMGLAPILAPVAGGALLASFGWPSIFILLTLFSAMCLVAVTLWLPE 181

Query: 182 SRKAGPGKFAFKELNPLAPLVWLWNFKPLLPLVTVSV--VFGLVAAIPGTIWV---LYGA 236
           +  AG  +        L   + L+  +  +  V      + G+ A I G+ +V   LYG 
Sbjct: 182 TYPAGLPRQPMS--GALGQYLRLFRDRFFIGHVLTGALCMAGMFAYITGSPFVFIELYGV 239

Query: 237 --ERFGW 241
             E FGW
Sbjct: 240 KPEHFGW 246



 Score = 52.0 bits (123), Expect = 3e-11
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 8/152 (5%)

Query: 236 AERFGWDSVHMGLSLSVFGVSGALAQAFLVGPLSRRFGDLGTLMIGVGFDMLAYMLMAFA 295
           A+ FG    H+ LSL+ + +  A+ Q  + GPL+ R+G  G L+IGV    LA +  AFA
Sbjct: 31  AQSFGTSVDHVQLSLAAYFIGLAIGQ-LVYGPLADRYGRRGPLLIGVTLFTLASLASAFA 89

Query: 296 -NQSWMGYAVAPLFALGGVA-MPALQSLVTSRVSDDQQGQLQGVLASLMSLAGIIGPVLT 353
            +  W+   V  + ALGG A M   +++V          ++   L  +M LA I+ PV  
Sbjct: 90  PSMDWL-IGVRFVQALGGCAGMVVARAVVRDLCDPMTSAKVFSQLMLVMGLAPILAPVAG 148

Query: 354 TAVF--FSTKSIWIGTIWLVGAALYLLALPLF 383
            A+   F   SI+I  +  + +A+ L+A+ L+
Sbjct: 149 GALLASFGWPSIFI--LLTLFSAMCLVAVTLW 178