Pairwise Alignments

Query, 568 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  441 bits (1134), Expect = e-128
 Identities = 248/545 (45%), Positives = 354/545 (64%), Gaps = 32/545 (5%)

Query: 6   PLLEVRNLVTEFPLRTGVFRAVNDISFSIEPGKTLCVVGESGSGKSVTARSILQIIDSPG 65
           PLL+VRNL   F    GV  AV ++SF I PG+TL +VGESGSGKSV+  +++Q++    
Sbjct: 5   PLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNA 64

Query: 66  YITSGSIILNKADGSSVDLAKLDPRGRAIRAVRGADIAMIFQEPMSSLSPVHTVGDQITE 125
            I   S I+ + +     L K D +   +R +RG  I MIFQEPM+SL+P   VG Q+ E
Sbjct: 65  RIHPESSIMFEGEEL---LNKTDTQ---MRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAE 118

Query: 126 VLRLHLKMSKAQARAEAIELLRQVEIPNPEKALDRYAFQYSGGMRQRAMIAMALACKPQL 185
            +R H  +S+ QA+   +EL + V +P+P+ A  ++  ++SGG  QR MIAMAL  +P +
Sbjct: 119 AIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDI 178

Query: 186 LIADEPTTALDVTTQAEILDLISRLQKAHGMAVLFITHDMGVVAQIADDVLVMHHGVVKE 245
           LIADEPTTALDVT QAE+L LI  +Q   GMA+LFITHD+GVV  +AD VLVM  G V E
Sbjct: 179 LIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVE 238

Query: 246 YGTVEQIFHKPQDPYTRMLIGSVLKLEQKAEIRLARPPLDQTAAPILEVKDLSMHF---- 301
            G+ EQ+F +P+  YTRMLI S+ K         ++ P+   AAP+L+ +D+ + F    
Sbjct: 239 QGSTEQLFLQPEHDYTRMLINSIPK--------GSKDPVAVDAAPLLKAEDIRVKFLVKP 290

Query: 302 -------GEMKALDGVSIKLLPGETLGIVGESGSGKTTMGRSIMRLYDPTAGEMLYRRAD 354
                     +A+ G+S++L  GETLGIVGESGSGK+T+GR+++ L  P+ G++ ++   
Sbjct: 291 YFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRALIGLL-PSTGQIAFKGQ- 348

Query: 355 GSVVDLSKIEGKELKAARRELRMVFQDPFGSLNPRMTVAQVIGEPLLVNGIAKGK-ELEE 413
               D   +  K+  A +++++MVFQDP+GSL+PRMTV ++I E LLV+     K E  +
Sbjct: 349 ----DFRALSEKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQ 404

Query: 414 RVCSLMEQVGLDPSGRERYPHAFSGGQRQRIGIARAITLRPRIIVADEATSALDVSVRFQ 473
           R    +E+V LDP+   RYPH FSGGQRQRI IARA+ L P  I+ DE TSALD SV+  
Sbjct: 405 RARRALEEVRLDPNSINRYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLT 464

Query: 474 VLDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRGKLVEVGEAEKVCNAPDHPYTQ 533
           V++LL ++Q    + Y+FISHD+ V++ + DRV VM +G+++E G AE + + P H YT+
Sbjct: 465 VIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTK 524

Query: 534 ALLSA 538
            L++A
Sbjct: 525 KLIAA 529



 Score =  179 bits (453), Expect = 3e-49
 Identities = 105/269 (39%), Positives = 162/269 (60%), Gaps = 27/269 (10%)

Query: 290 PILEVKDLSMHF----GEMKALDGVSIKLLPGETLGIVGESGSGKTTMGRSIMRLYDPTA 345
           P+L+V++LS+ F    G + A+  VS  + PGETL IVGESGSGK+    ++M+L    A
Sbjct: 5   PLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPKNA 64

Query: 346 -----------GEMLYRRADGSVVDLSKIEGKELKAARRELRMVFQDPFGSLNPRMTVAQ 394
                      GE L  + D     + +I G  +        M+FQ+P  SLNP M V  
Sbjct: 65  RIHPESSIMFEGEELLNKTD---TQMRRIRGDRIG-------MIFQEPMTSLNPYMRVGV 114

Query: 395 VIGEPLLVNGIAKGKELEERVCSLMEQVGL-DPSGR-ERYPHAFSGGQRQRIGIARAITL 452
            + E +  +      + ++RV  L + V L DP G  +++PH FSGGQ QRI IA A+  
Sbjct: 115 QVAEAIRCHRNVSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALIN 174

Query: 453 RPRIIVADEATSALDVSVRFQVLDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRG 512
            P I++ADE T+ALDV+V+ +VL L+ ++Q  +G+A +FI+HD+GV++++ DRV VM +G
Sbjct: 175 EPDILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKG 234

Query: 513 KLVEVGEAEKVCNAPDHPYTQALLSAIPR 541
            +VE G  E++   P+H YT+ L+++IP+
Sbjct: 235 DVVEQGSTEQLFLQPEHDYTRMLINSIPK 263