Pairwise Alignments

Query, 568 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  431 bits (1109), Expect = e-125
 Identities = 242/569 (42%), Positives = 357/569 (62%), Gaps = 47/569 (8%)

Query: 7   LLEVRNLVTEFPLRTGVFRAVNDISFSIEPGKTLCVVGESGSGKSVTARSILQIIDSPGY 66
           LLEV+NL  E+P R GV  AV  ++  I+ G+ + VVGESG+GKS    +++ ++  PG 
Sbjct: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62

Query: 67  ITSGSIILNKADGSSVDLAKLDPRGRAIRAVRGADIAMIFQEPMSSLSPVHTVGDQITEV 126
           I  G + LN        ++ L P+  A+R VRG+ I  IFQ+PM+SL+P+ TV  Q+TE 
Sbjct: 63  IAGGEVYLN-----GEKISGLSPQ--AMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115

Query: 127 LRLHLKMSKAQARAEAIELLRQVEIPNPEKALDRYAFQYSGGMRQRAMIAMALACKPQLL 186
           +  ++++S  +A   A+ L++QV IP PE  L +Y  Q+SGGMRQR +IA+ALA +P L+
Sbjct: 116 IHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLI 175

Query: 187 IADEPTTALDVTTQAEILDLISRLQKAHGMAVLFITHDMGVVAQIADDVLVMHHGVVKEY 246
           IADEPTTALDV+ Q +IL+LI  L K + +  + +THDMGVV+ + D V VM+ G + E+
Sbjct: 176 IADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEF 235

Query: 247 GTVEQIFHKPQDPYTRMLIGSVLKLEQKAE-------IRLAR--PPLD------------ 285
           G   ++   P+ PYTR LI +V + ++K +       I  A+   PLD            
Sbjct: 236 GPTAKVLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDH 295

Query: 286 -QTAAPILEVKDLSMHF-----------GEMKALDGVSIKLLPGETLGIVGESGSGKTTM 333
            +   P+L+V+++++ F             ++A + VS  +  GET G+VGESGSGK+T+
Sbjct: 296 RKYTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTI 355

Query: 334 GRSIMRLYDPTAGEMLYRRADGSVVDLSKIEGK-ELKAARRELRMVFQDPFGSLNPRMTV 392
            R I  LY P AG + +       +DL+ ++ + E +  RR+++MVFQ+P+ S+NPRM +
Sbjct: 356 ARVIAGLYQPNAGRVTFEG-----IDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKI 410

Query: 393 AQVIGEPLLVNGIAKGK-ELEERVCSLMEQVGLDPSGRERYPHAFSGGQRQRIGIARAIT 451
             +I EP+  + + + + E  + V  L+E VGL      +YPH FSGGQRQRI IARA+ 
Sbjct: 411 FDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALA 470

Query: 452 LRPRIIVADEATSALDVSVRFQVLDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYR 511
            RPR+++ DE TSALDVSV+ Q+L+LL  LQDEL L  +FISHD+ VIR MCDRVGVM  
Sbjct: 471 TRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQM 530

Query: 512 GKLVEVGEAEKVCNAPDHPYTQALLSAIP 540
           G L+EV   E++   P H Y++ L+S +P
Sbjct: 531 GTLLEVAPTEQLFTDPQHEYSKKLISLMP 559



 Score =  192 bits (488), Expect = 3e-53
 Identities = 112/278 (40%), Positives = 172/278 (61%), Gaps = 13/278 (4%)

Query: 291 ILEVKDLSMHF----GEMKALDGVSIKLLPGETLGIVGESGSGKTTMGRSIMRLYDPT-- 344
           +LEVK+L + +    G   A+  +++ +  GE +G+VGESG+GK+T+G +++ L  P   
Sbjct: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62

Query: 345 -AGEMLYRRADGSVVDLSKIEGKELKAARRELRMVFQDPFGSLNPRMTVAQVIGEPLLVN 403
            AG  +Y   +  +  LS    +E++ ++  +  +FQDP  SLNP  TV   + E +  N
Sbjct: 63  IAGGEVYLNGE-KISGLSPQAMREVRGSK--IGFIFQDPMTSLNPLFTVEHQLTETIHAN 119

Query: 404 GIAKGKELEERVCSLMEQVGL-DPSGR-ERYPHAFSGGQRQRIGIARAITLRPRIIVADE 461
                +E  +R  SLM+QVG+  P  R ++YPH FSGG RQR+ IA A+   P +I+ADE
Sbjct: 120 MQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADE 179

Query: 462 ATSALDVSVRFQVLDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRGKLVEVGEAE 521
            T+ALDVS++ Q+L+L+ +L  +  +  + ++HD+GV+  + DRV VMYRG LVE G   
Sbjct: 180 PTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTA 239

Query: 522 KVCNAPDHPYTQALLSAIPRPDPRDRDRTRRFRYVEPA 559
           KV   P+HPYT++L+SA+PR D R  DR     Y+E A
Sbjct: 240 KVLGTPEHPYTRSLISAVPRSD-RKLDRFPLVSYIEEA 276