Pairwise Alignments

Query, 568 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 546 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  461 bits (1187), Expect = e-134
 Identities = 251/548 (45%), Positives = 359/548 (65%), Gaps = 28/548 (5%)

Query: 7   LLEVRNLVTEFPLRTGVFRAVNDISFSIEPGKTLCVVGESGSGKSVTARSILQIIDSP-G 65
           LLEV++L  +F    G FRA + +SF ++ G+TL ++GESGSGKSV+A +I+ +ID+P G
Sbjct: 6   LLEVKDLTVDFLSLGGAFRATSGVSFHVDAGETLVILGESGSGKSVSASAIMGLIDTPPG 65

Query: 66  YITSGSIILNKADGSSVDLAKLDPRGRAIRAVRGADIAMIFQEPMSSLSPVHTVGDQITE 125
            I +GS+     D SS+   +        R + G  IAMIFQ+P+S L+PV+T+G Q+ E
Sbjct: 66  DICAGSVAYRGRDLSSLSEGER-------RDLNGRRIAMIFQDPLSHLNPVYTIGWQLEE 118

Query: 126 VLRLHLKMSKAQARAEAIELLRQVEIPNPEKALDRYAFQYSGGMRQRAMIAMALACKPQL 185
           V  +H   S A+AR  AIE+L +V IP PEK +D+Y  Q+SGG RQR MI MA+A +P++
Sbjct: 119 VFTVHGVASGAEARQRAIEILGRVGIPEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPEI 178

Query: 186 LIADEPTTALDVTTQAEILDLISRLQKAHGMAVLFITHDMGVVAQIADDVLVMHHGVVKE 245
           LIADEPTTALDV+ QA+IL+L+ +LQ   G+A++ ITHD+ V A +AD V+VM  G + E
Sbjct: 179 LIADEPTTALDVSVQAQILELLKKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIVE 238

Query: 246 YGTVEQIFHKPQDPYTRMLIGSVLKLEQKAEIRLARPPLDQTAAPILEVKDLSMHF---- 301
            G    +F  P   YTR LI ++   + +A  R ARP       PILEVK++   +    
Sbjct: 239 EGEARAVFENPAHSYTRTLINALPHADDRAPPRPARP----AGKPILEVKNIDKFYTLSS 294

Query: 302 ------GEMKALDGVSIKLLPGETLGIVGESGSGKTTMGRSIMRLYDPTAGEMLYRRADG 355
                   + A+  +S  +  GET+GIVGESGSGK+T+ R ++ L + + GE L+     
Sbjct: 295 GFFAKPARLHAVKNLSFDVAAGETIGIVGESGSGKSTVARVLLGLNEASGGEALFHGR-- 352

Query: 356 SVVDLSKIEGKELKAARRELRMVFQDPFGSLNPRMTVAQVIGEPLLVN-GIAKGKELEER 414
              D+ K++ K+L A RR+++MVFQDP+ S+NPRMTV  ++ EP  ++  I +     +R
Sbjct: 353 ---DVLKMDRKQLLAFRRKVQMVFQDPYSSMNPRMTVFDIVSEPWRIHKDILEKTRWRDR 409

Query: 415 VCSLMEQVGLDPSGRERYPHAFSGGQRQRIGIARAITLRPRIIVADEATSALDVSVRFQV 474
           V  L+  VGL+P   +RYPH FSGGQRQRI IARA+   P ++V DEA SALDVSV+ QV
Sbjct: 410 VTELLGLVGLNPEHAKRYPHQFSGGQRQRIAIARALACDPELVVCDEAVSALDVSVQVQV 469

Query: 475 LDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRGKLVEVGEAEKVCNAPDHPYTQA 534
           +DLL +L+D LGLAYIFI+HD+ ++R+  DR+ VM  G++VE    E++   P H YT+ 
Sbjct: 470 IDLLAELRDRLGLAYIFITHDLPIVRHFADRIIVMKSGEIVEHATTEEIFRNPQHAYTRQ 529

Query: 535 LLSAIPRP 542
           L++A P+P
Sbjct: 530 LINATPKP 537



 Score =  210 bits (534), Expect = 1e-58
 Identities = 129/277 (46%), Positives = 169/277 (61%), Gaps = 15/277 (5%)

Query: 287 TAAPILEVKDLSMHF----GEMKALDGVSIKLLPGETLGIVGESGSGKTTMGRSIMRLYD 342
           T   +LEVKDL++ F    G  +A  GVS  +  GETL I+GESGSGK+    +IM L D
Sbjct: 2   TGPHLLEVKDLTVDFLSLGGAFRATSGVSFHVDAGETLVILGESGSGKSVSASAIMGLID 61

Query: 343 PT-----AGEMLYRRADGSVVDLSKIEGKELKAARRELRMVFQDPFGSLNPRMTVAQVIG 397
                  AG + YR  D S   LS+ E ++L    R + M+FQDP   LNP  T+   + 
Sbjct: 62  TPPGDICAGSVAYRGRDLS--SLSEGERRDLNG--RRIAMIFQDPLSHLNPVYTIGWQLE 117

Query: 398 EPLLVNGIAKGKELEERVCSLMEQVGL-DPSGR-ERYPHAFSGGQRQRIGIARAITLRPR 455
           E   V+G+A G E  +R   ++ +VG+ +P  R ++YPH FSGGQRQRI I  AI LRP 
Sbjct: 118 EVFTVHGVASGAEARQRAIEILGRVGIPEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPE 177

Query: 456 IIVADEATSALDVSVRFQVLDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRGKLV 515
           I++ADE T+ALDVSV+ Q+L+LL KLQ E GLA I I+HD+ V   M DRV VM  G++V
Sbjct: 178 ILIADEPTTALDVSVQAQILELLKKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIV 237

Query: 516 EVGEAEKVCNAPDHPYTQALLSAIPRPDPRDRDRTRR 552
           E GEA  V   P H YT+ L++A+P  D R   R  R
Sbjct: 238 EEGEARAVFENPAHSYTRTLINALPHADDRAPPRPAR 274



 Score =  183 bits (464), Expect = 2e-50
 Identities = 111/277 (40%), Positives = 165/277 (59%), Gaps = 22/277 (7%)

Query: 2   KPA-KPLLEVRNLVTEFPLRTGVF------RAVNDISFSIEPGKTLCVVGESGSGKSVTA 54
           +PA KP+LEV+N+   + L +G F       AV ++SF +  G+T+ +VGESGSGKS  A
Sbjct: 274 RPAGKPILEVKNIDKFYTLSSGFFAKPARLHAVKNLSFDVAAGETIGIVGESGSGKSTVA 333

Query: 55  RSILQIIDSPGYITSGSIILNKADGSSVDLAKLDPRGRAIRAVRGADIAMIFQEPMSSLS 114
           R +L + ++ G    G  + +  D   +D  +L    R ++        M+FQ+P SS++
Sbjct: 334 RVLLGLNEASG----GEALFHGRDVLKMDRKQLLAFRRKVQ--------MVFQDPYSSMN 381

Query: 115 PVHTVGDQITEVLRLHLK-MSKAQARAEAIELLRQVEIPNPEKALDRYAFQYSGGMRQRA 173
           P  TV D ++E  R+H   + K + R    ELL  V + NPE A  RY  Q+SGG RQR 
Sbjct: 382 PRMTVFDIVSEPWRIHKDILEKTRWRDRVTELLGLVGL-NPEHA-KRYPHQFSGGQRQRI 439

Query: 174 MIAMALACKPQLLIADEPTTALDVTTQAEILDLISRLQKAHGMAVLFITHDMGVVAQIAD 233
            IA ALAC P+L++ DE  +ALDV+ Q +++DL++ L+   G+A +FITHD+ +V   AD
Sbjct: 440 AIARALACDPELVVCDEAVSALDVSVQVQVIDLLAELRDRLGLAYIFITHDLPIVRHFAD 499

Query: 234 DVLVMHHGVVKEYGTVEQIFHKPQDPYTRMLIGSVLK 270
            ++VM  G + E+ T E+IF  PQ  YTR LI +  K
Sbjct: 500 RIIVMKSGEIVEHATTEEIFRNPQHAYTRQLINATPK 536