Pairwise Alignments

Query, 374 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  172 bits (436), Expect = 1e-47
 Identities = 88/226 (38%), Positives = 138/226 (61%), Gaps = 7/226 (3%)

Query: 149 FGADRLGRDVFSRVVQGSQISLSIGLVGVFFSLLLGVVLGGISGYYGGRIDFVMQRVIDF 208
           FG D LGRD+F R + G +ISL +G++G   ++L+G + G  SG+ GGR D VM R+++ 
Sbjct: 82  FGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEI 141

Query: 209 VLSLPTIPIWLAMAAALPQGWPATLQYMMITIILSLTGWAQLARVVRGRFLSLRTEEFVA 268
           + ++P + + + +     +        ++I + +    W  +AR+VRG+ LSLR++EF+ 
Sbjct: 142 LYAIPFMFLVIVLVTFFGRN------IVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIE 195

Query: 269 AARLDGVPEGRIIFRHMLPSFSSHIIASVTLAVPAMILAETSLSFLGLGLQPPTISWGVL 328
           AA + GV +  II RH++P+    +    TL +P+MIL E+ LSFLGLG+Q P  SWG L
Sbjct: 196 AAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGAL 255

Query: 329 LREAQNIRSIATAPWLFLPGVAVVVAVMALNLLGDGLRDAADPYNK 374
           L+E  N   +A    LF P   +V+ +   N +GDGLRDA DP ++
Sbjct: 256 LQEGANTMEVAIWQLLF-PAAFMVLTLFCFNYVGDGLRDALDPKDR 300