Pairwise Alignments

Query, 374 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 375 a.a., ABC transporter for D-Raffinose, permease component 1 (from data) from Sinorhizobium meliloti 1021

 Score =  251 bits (641), Expect = 2e-71
 Identities = 134/352 (38%), Positives = 201/352 (57%), Gaps = 5/352 (1%)

Query: 23  LIWWAFKRHRLAMAALVVTIAMYVVALVPGFFAINDPVLQNARATFYPPQRVHLIDTTDG 82
           L+W   KR    +  LV+   + ++A+   F +  DP   +    F  PQ +   D    
Sbjct: 27  LVWRRLKRSWTGLLGLVLVCLLILMAVFAEFLSPVDPKATDV--AFAQPQTISFRDKEGN 84

Query: 83  FSVGLHYYPLKLTR--NPETLAAVFVEDTGKKIPIQLFGRGYEYSVLGLFDTNIHLLAST 140
           F      YP++ T   +P T   +   D      +  F +G  Y + GL     HL  + 
Sbjct: 85  FVFPPRSYPVRETEELDPVTFQPIIGPDYDNPQVLGFFVKGAPYRLFGLIPAERHLFGAV 144

Query: 141 DKTRPLFLFGADRLGRDVFSRVVQGSQISLSIGLVGVFFSLLLGVVLGGISGYYGGRIDF 200
           D T P+ L G D+ GRDV SR++ GS+ISL I L  VF   ++G  +G +SGY+GGR D 
Sbjct: 145 DGT-PVHLLGTDKFGRDVLSRILYGSRISLMIALTVVFIVTVVGTTVGMVSGYFGGRFDA 203

Query: 201 VMQRVIDFVLSLPTIPIWLAMAAALPQGWPATLQYMMITIILSLTGWAQLARVVRGRFLS 260
            +QR ++ VL+ P +P++LA+A+ +P   P  +    + I++S  GWAQ++R VRG+ L+
Sbjct: 204 WVQRFVELVLAFPQLPLYLALASLIPVTAPTNVFLAFVIIVMSALGWAQMSREVRGKTLA 263

Query: 261 LRTEEFVAAARLDGVPEGRIIFRHMLPSFSSHIIASVTLAVPAMILAETSLSFLGLGLQP 320
           L   E+V AA   G  + RIIF+H+ P+  SH+I +VTLA+P ++L E+ L FLG  ++P
Sbjct: 264 LARIEYVRAAIAIGATDRRIIFQHIFPNVMSHVIVAVTLAIPHVVLLESFLGFLGFAVKP 323

Query: 321 PTISWGVLLREAQNIRSIATAPWLFLPGVAVVVAVMALNLLGDGLRDAADPY 372
           P ISWG++L++  N  +I + PW+  P   V+V V A N LGDGLRDA DPY
Sbjct: 324 PLISWGLMLQDTANYSAIGSYPWILSPVAFVLVTVFAFNALGDGLRDAIDPY 375