Pairwise Alignments

Query, 649 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  104 bits (260), Expect = 9e-27
 Identities = 120/507 (23%), Positives = 203/507 (40%), Gaps = 91/507 (17%)

Query: 116 LAEKWEVSPDASEFTFHLIEGAKWSDGHPFTADDVVFAIEDCIKNKELYSATPAQLSVAG 175
           LAE ++++ D    TF + +G KWSDG  FTADDVV++        EL      Q  +  
Sbjct: 79  LAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPEL-----DQRGINK 133

Query: 176 KAVDVSKVDDFTVKFKFAAPNALYLENLATPLGQHPTLFPKHYCSKFLPKYNAALDAEVK 235
               V KVD++ V+F+ +  N+    N+   +   P +  +H                  
Sbjct: 134 WVTSVEKVDEYKVRFRLSEANS----NVPYEISLIP-IVAEHV----------------- 171

Query: 236 AAGVSSWTELFRAKCGDIEIPSRWSNVDKPTLDPWVVKEPYSGGATRVVMTRNPYFWQ-- 293
                 W         D++ P+ ++N +     P+ V + ++      +  RNP +W   
Sbjct: 172 ------WK--------DVKDPTTFTNENPVGTGPFTVIDTFT--PQLYIQCRNPNYWDAA 215

Query: 294 -VDTDGNQLPYINEINFGISQDVESLMLNVISGKIDIQERHISVLANKPTLSQNMEKGNY 352
            ++ D  ++P I         + + L+  +++ ++D     +      P + +     N 
Sbjct: 216 NLEVDCLRVPQI--------ANNDQLLGKIVNSELDWTSSFV------PDIDRTYAAANP 261

Query: 353 RLMTLVPSAAQQCQIYLNITHKDPAMRKMFADKSFRQALSLGLNRQEIIEIVYFGQSEA- 411
                 P+A  Q    +N  + DPA ++   +  FR+A S+ L+RQ II+I ++G     
Sbjct: 262 NHHYWYPAAGTQA-FMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVN 320

Query: 412 -YQTG-PRPTHPWYHE---KLARQSTEFDADKANELLDKAGYDKKNGNGIRLRPDGQPIF 466
            + +G       W  E   K  +    +D + + +LL KAG+   NG+G    P G+   
Sbjct: 321 DFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFE 380

Query: 467 FSIDVIPTLYPDLVDTLELVKAQWAQIGVDIKVNTIERALYYTRGDDNAHDAAVWPGPGG 526
             I   P  + D  +T++L   Q  ++G+  K  T E A+Y     +  +D A      G
Sbjct: 381 LLIQ-SPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHG 439

Query: 527 LDPMLDPRDFFAFHPQGSRYAIPWALWYTSNGQKGEEPPE------SQKKRFKLFDEARS 580
            DP       F +          W   Y S  Q G+  P       + KK   L D    
Sbjct: 440 ADP-------FTY----------WNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYK 482

Query: 581 TADIAKRGEFMKQIFDIAAEEFETIGV 607
           TAD  ++      I  I AE   TI V
Sbjct: 483 TADKNEQLAIAHGIQKIIAENQVTIPV 509