Pairwise Alignments

Query, 649 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 76.3 bits (186), Expect = 3e-18
 Identities = 118/540 (21%), Positives = 214/540 (39%), Gaps = 95/540 (17%)

Query: 63  NPMVVTPFEKVGTYGGTLRRGLRGSSDHNGILRMVGNQSLVRWNMDFTEVLPNLAEKWEV 122
           +P+ + P E++   GGTL+            L  +    L+R+     E  P LAE W+ 
Sbjct: 33  DPVSMDPHEQLS--GGTLQ------------LSHMVFDPLIRFTQKM-EFEPRLAESWQ- 76

Query: 123 SPDASEFTFHLIEGAKWSDGHPFTADDVVFAIEDCIKNKELYSATPAQLSVAGKAVDVSK 182
             D     F L +G K+  G+ FTADDVV+      ++ +          +    V ++K
Sbjct: 77  RVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKESADFKG-------IFEPLVSLTK 129

Query: 183 VDDFTVKFKFAAPNALYLENLATPLGQHPTLFPKHYCSKFLPKYNAALDAEVKAAGVSSW 242
           VDD+T++ K A    L +EN+AT       +FP    SKF     A  D + KA  V   
Sbjct: 130 VDDYTIEIKTAGTYPL-IENVAT------YIFPMD--SKFYTGTTA--DGKNKAEIVKHG 178

Query: 243 TELFRAKCGDIEIPSRWSNVDKPTLDPWVVKEPYSGGATRVVMTRNPYFWQVDTDGNQLP 302
                           +++ +     P+ V     G   ++   RNP +W   + GN   
Sbjct: 179 NS--------------FASENISGTGPFTVTAREQG--VKLEFQRNPNYWDKASKGN--- 219

Query: 303 YINEINFGISQDVESLMLNVISGKIDIQERHISVLANKPTLSQNMEKGN-YRLMTLVPSA 361
            ++++   + ++  + +  ++SG +D+      +    P   Q ++      L T+  + 
Sbjct: 220 -VDKLTLAVIKEDATRVAALLSGGVDM------IAPVSPNDYQRIKDAKGVDLFTMPGTR 272

Query: 362 AQQCQIYLNITHKDPAMRKMFADKSFRQALSLGLNRQEIIEIVYFGQSEAYQTGPRPTHP 421
               Q+  N    +PA++    D   RQA+   +N + I++ V  G +          + 
Sbjct: 273 VITFQMNQN---SNPALK----DVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYA 325

Query: 422 WYHEKLARQSTEFDADKANELLDKAGYDKKNGNGIRLRPDGQPIFFSIDVIPTLYPDLVD 481
            Y+E L      FD +KA EL+ +AGY+ K  N   + P+ +            Y +   
Sbjct: 326 GYNENL---KPRFDLNKAKELMKEAGYE-KGFNLTMIAPNNR------------YVNDEK 369

Query: 482 TLELVKAQWAQIGVDIKVNTIERALYYTRGDDNAHDAAVWPGPGGLDPMLDPRDFFAFHP 541
             +   A  ++IG+ + + T+ +A Y+   D  A D  +       +   +  +F     
Sbjct: 370 IAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGWHPDTEDSANFTEFLTMTR 429

Query: 542 QGSRYAIPWALWYTSNGQKGEEPPESQKKRFKLFDEARSTADIAKRGEFMKQIFDIAAEE 601
             +     +   Y SN +             KL + A    D+ KR   +K++ +I   E
Sbjct: 430 DSNTGKGQYNCGYYSNAEVD-----------KLVNAANEETDLEKRSTMLKKVEEILYNE 478