Pairwise Alignments

Query, 649 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 693 a.a., ABC transporter for D-Raffinose, periplasmic substrate-binding protein (from data) from Sinorhizobium meliloti 1021

 Score =  152 bits (385), Expect = 4e-41
 Identities = 151/619 (24%), Positives = 264/619 (42%), Gaps = 77/619 (12%)

Query: 48  VKDGKLPPLADRLPKNPMVVTPF---EKVGTYGGTLRRGLRGSSD--------------- 89
           VK GKLPP+A+RLPK PMV       + +G YG  +R  + G  +               
Sbjct: 71  VKAGKLPPVAERLPKEPMVFKAGNMPDGMGVYGDVMRHVIGGRPEGWNYSAGQTQGWGGI 130

Query: 90  HNGILRMVGNQS-LVRWNMDFTEVLPNLAEKWEVSPDASEFTFHLIEGAKWSDGHPFTAD 148
             G+   +   + L +   D  E LPNLA+ W+ S D  + T HLIEGAKWSDG PF AD
Sbjct: 131 DIGMFECLTRTAPLFQVEADDMEPLPNLAKSWDWSEDGRKLTMHLIEGAKWSDGDPFDAD 190

Query: 149 DVVFAIEDCIKNKELYSATPAQLSVAGKAVDVSKVDDFTVKFKFAAPNALYLENLATPLG 208
           DV+F  ED + +  +     A     G+   + K+D +TV++ F    A   ++L     
Sbjct: 191 DVMFYWEDNVLDSSVSPLNGATPETFGEGTTLKKIDQYTVEWTF--KEAFPRQHLFAMAY 248

Query: 209 QHPTLFPKHYCSKFLPKYNAALDAEVKAAGVSSWTELFRAKCGDIEIPSRWSNVDKPTLD 268
                 P H      PKY      E K                    P+ + N+  P + 
Sbjct: 249 GTFCPGPSHILKTKHPKYAGTTYNEYKNG-----------------FPAEYMNL--PVMG 289

Query: 269 PWVVKEPYSGGATRVVMTRNPYFWQVDTDGNQLPYINEINFGIS----QDVESLMLNVIS 324
            WV           +V+ RNPY+W+VD  GNQLPY+NE+++ +S    +DV+++  +   
Sbjct: 290 AWVPVAYRPDDI--IVLRRNPYYWKVDEAGNQLPYLNELHYKLSTWADRDVQAIAGSGDI 347

Query: 325 GKIDIQERHISVLANKPTLSQNMEKGNYRLMTLVPSAAQQCQIYLNITHK---DP----- 376
             ++  E  +       +L +   +     +   P       +++N +     DP     
Sbjct: 348 SNLEQPENFVE------SLKRAANESAPARLAFGPRVIGY-NMHMNFSGNGWGDPDERAK 400

Query: 377 AMRKMFADKSFRQALSLGLNRQEIIEIVYFGQSEAYQTGPRPTHPWYHEKLARQSTEFDA 436
           A+R++  +  FR+A+++ ++R+++ E +  G   A   G   +   ++++ +      D 
Sbjct: 401 AVRELNRNLDFRKAVTMAVDRKKLGEALVKGPFTAIYPGGLSSGTSFYDRNSTIYYPHDL 460

Query: 437 DKANELLDKAGYDKKNGNGIRLRPDGQPIFFSIDVIPTLYPDLVDTLELVK---AQWAQI 493
           + A  LL+K G    +GNG    P G+     ++++  +  D      L +    Q  ++
Sbjct: 461 EGAKVLLEKVGLKDTDGNGFVNFPAGKLGGRDVEIVLLVNSDYSTDRNLAEGMVGQMEKL 520

Query: 494 GVDIKVNTIERALYYTRGDDNAHDAAVWPGPGGLDPMLDPRDFFAFHPQGSRYAI--PWA 551
           G+ + +N +         D    DAA + G        +  +F +      + A   P  
Sbjct: 521 GLRVVLNAL---------DGKQRDAANYAGRFDWMIHRNTAEFASVVQNTPQLAPTGPRT 571

Query: 552 LWYTSNGQKGE-EPPESQKKRFKLFDEARSTADIAKRGEFMKQIFDIAAEEFETIGVCLA 610
            W+    + GE +    +++   + ++  ++ D  +R E MKQ   +A    +T+G+   
Sbjct: 572 SWHHRAPEGGEVDVMPHEQELVDIVNKFIASNDNDERTELMKQYQKVATTNVDTVGLTEY 631

Query: 611 VGGFGIIRNNLHNVPEKEP 629
            G   II     N+P   P
Sbjct: 632 PGAL-IINKRFSNIPPGAP 649