Pairwise Alignments

Query, 874 a.a., ATP-dependent Clp protease, ATP-binding subunit from Agrobacterium fabrum C58

Subject, 854 a.a., ClpB protein from Pseudomonas fluorescens FW300-N2E2

 Score =  962 bits (2487), Expect = 0.0
 Identities = 487/857 (56%), Positives = 642/857 (74%), Gaps = 4/857 (0%)

Query: 1   MNIDKYSERVRGFLQSAQTFALAENHQQFSPEHVLKVLLDDEQGMAASLIERAGGDAKEA 60
           M ID+ + +++  L  AQ+ A+  +H    P H+++ +L+ + G    L+ + G D    
Sbjct: 1   MRIDRLTSKLQLALSDAQSLAVGLDHPGIEPAHLMQAMLEQQGGSIKPLLMQVGFDVNSL 60

Query: 61  RLANDAALAKLPKVSGGNGGLSLTAPLAKVFSTAEDLAKKAGDSFVTVERLLQALAIESS 120
           R      L +LPK+    G ++++  LA++ + A+ LA++ GD F++ E +L A A++ +
Sbjct: 61  RKELAKELDQLPKIQNPTGDVNMSQDLARLLNQADRLAQQKGDQFISSELVLLA-AMDEN 119

Query: 121 ASTSASLKKAGATAQALNQVINDIRKGRTADSANAEQGFDALKKYARDLTEEAREGRLDP 180
           +     L   G + +AL   IN++R G   + AN E+   AL KY  DLT+ A EG+LDP
Sbjct: 120 SKLGKLLLGQGVSKKALENAINNLRGGEAVNDANHEESRQALDKYTVDLTKRAEEGKLDP 179

Query: 181 VIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKKLMA 240
           VIGRDDEIRRTIQVL RRTKNNPVLIGEPGVGKTAIAEGLA RI+NG+VP+ LK K+L++
Sbjct: 180 VIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGEVPDGLKGKRLLS 239

Query: 241 LDMGALIAGAKYRGEFEERLKAVLNEVQAENGGIILFIDEMHTLVGAGKADGAMDASNLL 300
           LDMGALIAGAKYRGEFEERLKA+LNE+  + G IILFIDE+HT+VGAGK +G+MDA N+L
Sbjct: 240 LDMGALIAGAKYRGEFEERLKALLNELSKQEGQIILFIDELHTMVGAGKGEGSMDAGNML 299

Query: 301 KPALARGELHCVGATTLDEYRKHVEKDPALARRFQPVLVDEPNVEDTISILRGLKEKYEQ 360
           KPALARGELHCVGATTL+EYR+++EKD AL RRFQ VLV+EP+ EDTI+ILRGLKE+YE 
Sbjct: 300 KPALARGELHCVGATTLNEYRQYIEKDAALERRFQKVLVEEPSEEDTIAILRGLKERYEV 359

Query: 361 HHKVRISDSALVAAATLSNRYITDRFLPDKAIDLMDEAASRLRMQVDSKPEELDELDRRI 420
           HHKV I+D A++AAA LS+RYITDR LPDKAIDL+DEAASR+RM++DSKPE LD L+RR+
Sbjct: 360 HHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSKPEVLDRLERRL 419

Query: 421 IQLKIEREALKQETDQSSVDRLRKLEDELADTEEKADALTARWQAEKQKLGHAADLKKRL 480
           IQLK+E +ALK+E+D+++  RL +L++E+   E +   L   W +EK ++  +A +++++
Sbjct: 420 IQLKVESQALKKESDEAAKKRLERLQEEIVRHEREYSDLEEIWNSEKAEVQGSAQIQQKI 479

Query: 481 DEARNELAIAQRNGQFQRAGELTYGIIPGLEKELAAAEARDSSGAGSMVQEVVTPDNIAH 540
           +++R EL  A+R G   R  EL YG+IP LE+ L   +    S    +++  VT + IA 
Sbjct: 480 EQSRQELEAARRKGDLNRMAELQYGVIPDLERSLQMVDQHGKS-ENQLLRSKVTEEEIAE 538

Query: 541 VVSRWTGIPVDKMLEGQREKLLRMEDELAKSVVGQGEAVQAVSKAVRRSRAGLQDPNRPI 600
           VVS+WTGIPV KMLEG+R+KLL+ME  L + V+GQ EAV AVS AVRRSRAGL DPNRP 
Sbjct: 539 VVSKWTGIPVSKMLEGERDKLLKMESLLHQRVIGQEEAVVAVSNAVRRSRAGLSDPNRPS 598

Query: 601 GSFIFLGPTGVGKTELTKSLARFLFDDETAMVRLDMSEYMEKHSVARLIGAPPGYVGYEE 660
           GSF+FLGPTGVGKTEL K+LA FLFD E AMVR+DMSE+MEKHSVARLIGAPPGYVGYEE
Sbjct: 599 GSFMFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEE 658

Query: 661 GGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTIIIMTS 720
           GG LTEAVRR+PY V+L DE+EKAHPDVFN+LLQVL+DGRLTD  GRTVDF+NT+I+MTS
Sbjct: 659 GGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFRNTVIVMTS 718

Query: 721 NLGSEFMTQMGDNDDVDSVRELVMERVRSHFRPEFLNRIDDIILFHRLRRDEMGAIVEIQ 780
           NLGS  + ++    D ++ R  VM+ + +HFRPEF+NR+D++++F  L RD++  I EIQ
Sbjct: 719 NLGSTQIQEL--VGDREAQRAAVMDAISTHFRPEFINRVDEVVIFEPLARDQIAGITEIQ 776

Query: 781 LKRLVSLLADRKITLELDEDARSWLANKGYDPAYGARPLKRVIQKSVQDRLAEMILGGEI 840
           L RL S L +R++ L+L ++A   L   GYDP YGARPLKR IQ+ +++ LA++IL G  
Sbjct: 777 LGRLRSRLTERELKLQLSDEALDKLIAVGYDPVYGARPLKRAIQRWIENPLAQLILSGRF 836

Query: 841 PDGSRVKVTSGTDRLLF 857
             G  V  T   D ++F
Sbjct: 837 MPGETVTGTVENDEIVF 853