Pairwise Alignments

Query, 874 a.a., ATP-dependent Clp protease, ATP-binding subunit from Agrobacterium fabrum C58

Subject, 869 a.a., type VI secretion system ATPase TssH from Vibrio cholerae E7946 ATCC 55056

 Score =  504 bits (1298), Expect = e-147
 Identities = 316/862 (36%), Positives = 484/862 (56%), Gaps = 80/862 (9%)

Query: 3   IDKYSERVRGFLQSAQTFALAENHQQFSPEHVLKVLLDDEQGMAASLIERAGGDAKEARL 62
           I K + + +  L+ A +  +   H + + E+ L VLLD+       ++++AG +  + + 
Sbjct: 10  IAKLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQAGLEVDQVKQ 69

Query: 63  ANDAALAKLPKVSGGNGGLSLTAPLAKVFSTAEDLAKKAGDSFVTVERLLQALAIESSAS 122
           A                       +A  +S  + L      S + VE L +A  + S+  
Sbjct: 70  A-----------------------IASTYSREQVLDTYPAFSPLLVELLQEAWLLSSTEL 106

Query: 123 TSASLKKAGATAQALNQV--------------IN--DIRK------GRTADSANAEQGFD 160
             A L+       AL +               IN  +++K        +A++A A+   +
Sbjct: 107 EQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHFAMILSDSAETAVAKTDKN 166

Query: 161 A-----------LKKYARDLTEEAREGRLDPVIGRDDEIRRTIQVLSRRTKNNPVLIGEP 209
           A           L ++  ++TE+AR G LDPV+ R++E+   + +L RR KNNP+++GE 
Sbjct: 167 AANPLQAAAETPLGRFCTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEA 226

Query: 210 GVGKTAIAEGLALRIVNGDVPESLKDKKLMALDMGALIAGAKYRGEFEERLKAVLNEVQA 269
           GVGK+A+ EGLALR+V G VP  L++ +L +LD+G L AGA  +GEFE+RLK V++ ++ 
Sbjct: 227 GVGKSAMIEGLALRVVAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQ 286

Query: 270 ENGGIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCVGATTLDEYRKHVEKDPA 329
               IILFIDE HTL+G+G  +G  DA+NLLKPALARGEL  V ATT  EY+K+ EKDPA
Sbjct: 287 SPKPIILFIDEAHTLIGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPA 346

Query: 330 LARRFQPVLVDEPNVEDTISILRGLKEKYEQHHKVRISDSALVAAATLSNRYITDRFLPD 389
           L RRFQ V +DEP ++  + ILRGL   YE+ H V I+D AL AAA LS RYI+ R LPD
Sbjct: 347 LTRRFQLVKLDEPTIDQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPD 406

Query: 390 KAIDLMDEAASRLRMQVDSKPEELDELDRRIIQLKIEREALK------QETDQSSVDRLR 443
           KAID++D A +R+ + + + P+ L  L+    Q ++E + L+      QE D   +D LR
Sbjct: 407 KAIDVLDTACARIAINMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLR 466

Query: 444 KLEDELADTEEKADALTARWQAEKQKLGHAADLKKRLDEARNELAIAQRNGQFQRAGELT 503
               ELAD  EKA ALT  WQ +K  +     L+  L     EL+ AQ     ++  +  
Sbjct: 467 --NQELADEAEKA-ALTQSWQQQKSLVESIIALRAEL----MELSQAQ-----EQDPDHL 514

Query: 504 YGIIPGLEKELAAAEARDSSGAGSMVQEVVTPDNIAHVVSRWTGIPVDKMLEGQREKLLR 563
             +   L+++  A +A D   A  ++   V  D IA V++ WTG+PVD+M   +  K+  
Sbjct: 515 LVVRTALQEQYQALDAIDH--AERLMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITH 572

Query: 564 MEDELAKSVVGQGEAVQAVSKAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTELTKSLARF 623
           +   L +++ GQ  A++ + + +  +RA L+ P RP G+F+ +GP+GVGKTE    LA  
Sbjct: 573 LTSILGQAIKGQETAIERIHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQ 632

Query: 624 LFDDETAMVRLDMSEYMEKHSVARLIGAPPGYVGYEEGGALTEAVRRRPYQVVLFDEIEK 683
           L+  +  +  ++MSEY EKH+V+RLIG+PPGYVGY EGG LTEA+R+ PY VVL DE+EK
Sbjct: 633 LYGGKQFLTTINMSEYQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEK 692

Query: 684 AHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTIIIMTSNLGSEFMTQMGDNDDVDSVRELV 743
           AHP+V N+  Q  D G + DG+GR +D +N +  +TSNLG  + T +   D+   + E +
Sbjct: 693 AHPEVLNIFYQGFDKGEIADGEGRVIDCQNIVFFLTSNLG--YQTIVDYADEPAKLDEAL 750

Query: 744 MERVRSHFRPEFLNRIDDIILFHRLRRDEMGAIVEIQLKRLVSLLADR-KITLELDEDAR 802
              + + F+P  L R+ ++I +  L ++ +  IV  +L RL  L   R    + ++E   
Sbjct: 751 YPELAAFFKPALLARM-EVIPYLPLGKEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLI 809

Query: 803 SWLANKGYDPAYGARPLKRVIQ 824
             + ++      GAR L+ +I+
Sbjct: 810 DEILSRATRSENGARMLEAIIE 831