Pairwise Alignments

Query, 615 a.a., cold-shock dead-box protein A from Agrobacterium fabrum C58

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  261 bits (666), Expect = 9e-74
 Identities = 190/613 (30%), Positives = 304/613 (49%), Gaps = 33/613 (5%)

Query: 10  AIAQALEKRGYKDLTPVQQAMLAPELANKDALVSAQTGSGKTVAFGIALATTLLSENTRF 69
           AI  AL + G+   TP+Q A +   L  +DAL  AQTG+GKT AF + L   L     + 
Sbjct: 36  AILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK- 94

Query: 70  GQASAPLALAIAPTRELAMQVKRELEWLYE-FAGVSIASCVGGMDIRNERRALERGAHIV 128
                P A+ +APTRELA+QV  E++ L +   G+ +    GG  I ++ RAL+ GAHIV
Sbjct: 95  -----PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIV 149

Query: 129 VGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPDDRRTLMFSAT 188
           VGTPGR+ D I R+ L L      +LDEADEML +GF +D+ +I+E++P+  + ++FSAT
Sbjct: 150 VGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSAT 209

Query: 189 VPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVSPSDRENAIINALRFYEARNAI 248
           +P  + ++ E + +N   +  A   +    +E +  +V   +++ A+   L   E   +I
Sbjct: 210 MPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASI 269

Query: 249 VFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVATDVAARGI 308
           VF  TR     L   L  RGF   AL G++ Q+ R   +  ++ G   + VATDV ARG+
Sbjct: 270 VFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGL 329

Query: 309 DLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVSQRRKAERLLEGAKVSAA 368
           D+P +  V + D+P + E+ +HR GRTGRAG+KG + ++V  +Q R    +    + S  
Sbjct: 330 DVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSME 389

Query: 369 WVRPPSVEEIVE----RDGARLLADPTLSEAVTDDERDFVNKLLEQHGAEKVAAAFVRLY 424
            ++ P  +++ E    + G  L AD   S    +   D V KL  Q   E  A     + 
Sbjct: 390 EIQLPHRDKVAESRLTKLGQELAADKEFSS--LERFADLVEKL--QASLEIDATTLAAIL 445

Query: 425 HSGRSAPEDIFEVALD----------NTRKPRRDSFETTENNAPR----RDRSDFSDSAW 470
              +     +F V  D          + R+ RRD     +  A R    RD+ +  D   
Sbjct: 446 LKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQEN-HDWDT 504

Query: 471 FSLSVGRKQSAEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKD 530
           + L VGR Q  + + ++  L     +T+  IGAI++ Q  TFV+L     +  +S + K 
Sbjct: 505 YQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKL 564

Query: 531 MMLEK--GIRLKQMEGKPEMTGNAREDTRPATAQRKFTKSDNAGAPRDDRKADDKPWKKK 588
            + +K  G  +   +   E  G AR +  P     +  + +  G  R  R+   +  + +
Sbjct: 565 RIRQKEVGAVVCDFDDFRESRGGARREGGPRREGGRRPEGNREGGFRGGREGGREGGRGR 624

Query: 589 KAFGDKPKYEGKK 601
              G +P  EG++
Sbjct: 625 GGEG-RPFREGER 636