Pairwise Alignments

Query, 615 a.a., cold-shock dead-box protein A from Agrobacterium fabrum C58

Subject, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score =  258 bits (660), Expect = 4e-73
 Identities = 169/518 (32%), Positives = 281/518 (54%), Gaps = 20/518 (3%)

Query: 6   GIAPAIAQALEKRGYKDLTPVQQAMLAPELANK-DALVSAQTGSGKTVAFGIALATTLLS 64
           G++  I +ALEK+G+ + TP+Q+  +   +  K D +  AQTG+GKT AFGI +  T+  
Sbjct: 8   GLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILETI-D 66

Query: 65  ENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRNERRALERG 124
           E++R  QA     L +APTRELA+QV  E++ +     +++    GG  I  + R L RG
Sbjct: 67  EHSRNTQA-----LILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELRRG 121

Query: 125 AHIVVGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPDDRRTLM 184
             IVVGTPGR+ DHI R  + L ++  VVLDEADEML++GF +D+E IL+    D+R L+
Sbjct: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181

Query: 185 FSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVSPSDRENAIINALRFYEA 244
           FSAT+P SI KLA++Y +    I    +Q      +     +   D+   +   +   + 
Sbjct: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241

Query: 245 RNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVATDVA 304
              ++FC T+A V+ +  RLN +G++   L G++TQ +R   L   +  +  V VATDVA
Sbjct: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301

Query: 305 ARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVSQRRKAERLLEGAK 364
           ARGID+  L  V++ D+P N E+ +HR GRTGRAG++G +   V  S+ RK + + + AK
Sbjct: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361

Query: 365 VSAAWVRPPSVEEIVERDGARLLA--DPTLSEAVTDDERDFVNKLLEQHGAEKVAAAFVR 422
                   P V++I+     ++++     L      D     + LLE    ++V +A ++
Sbjct: 362 TEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLEDADPQEVLSAVLK 421

Query: 423 LYHSGRSAPEDIFEVALDNTRKPRRDSFETTENNA-PRRDRSDFS--DSAWFSLSVGRKQ 479
                  A +D  E++  N +K  R S  +  +     R R  F+  ++    +++G+  
Sbjct: 422 Y------ALKD--ELSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGENVRLFVALGKLD 473

Query: 480 SAEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAA 517
              P+ L+  + R   +  +DI  +++ +  +FV +++
Sbjct: 474 KMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSS 511