Pairwise Alignments

Query, 188 a.a., RNA polymerase sigma factor from Agrobacterium fabrum C58

Subject, 168 a.a., RNA polymerase sigma-54 factor RpoN from Pseudomonas fluorescens FW300-N2E2

 Score = 97.4 bits (241), Expect = 1e-25
 Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 12  FKREMLAALPNLRAFAISLIRSRDRADDLVQDTIMKAWAKQDSFQPGTNMRAWLVTILRN 71
           F  ++   +P LR FA+SL R+   ADDLVQ  + +A +K +  +P  ++RAWL +IL  
Sbjct: 4   FDEQLRELIPRLRRFAVSLTRNPSNADDLVQMCLERALSKWNDKRPDGDLRAWLFSILYR 63

Query: 72  EFYSQIRKSGREVQDTDGVYTSRLSVPPEQHGSVDLQDFRTALAKLPDDQREAILLIGAS 131
           +F    R+S R  +  +  +T R    P    SV  Q    A  +L  +QR  +L +   
Sbjct: 64  QFLDSHRRSRRYARMLE-FFTGRDDAHPSAERSVIAQSSLQAFDQLTTEQRALLLWVSVE 122

Query: 132 GFAYEEAAEICGCPVGTIKSRVSRARLRLQEL 163
           G +Y++ A+I G P GT+ SR+SRAR  L++L
Sbjct: 123 GLSYQQIADILGVPTGTVMSRLSRARQALRQL 154