Pairwise Alignments

Query, 188 a.a., RNA polymerase sigma factor from Agrobacterium fabrum C58

Subject, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 69.7 bits (169), Expect = 3e-17
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 3/143 (2%)

Query: 22  NLRAFAISLIRSRDRADDLVQDTIMKAWAKQDSFQPGTNMRAWLVTILRNEFYSQIRKSG 81
           +L  +A  L + R  A+DLVQ+T ++AW   DS       +AWL+TILR E   +  +  
Sbjct: 37  DLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRRENARRFERKQ 96

Query: 82  REVQDTDGVYTSRLSVPPEQHGSVDLQDFRTALAKLPDDQREAILLIGASGFAYEEAAEI 141
            ++ D D           E H +  LQ     + KL  + RE + L    GF+ EE A+I
Sbjct: 97  FDLVDIDDHDYEAKYSDDEHHQNEWLQ---RQILKLDVEYRELLFLQVVGGFSGEEIADI 153

Query: 142 CGCPVGTIKSRVSRARLRLQELL 164
                 T+ +R+ RAR +L+E++
Sbjct: 154 LSLNKNTVMTRLFRARNQLKEMM 176