Pairwise Alignments

Query, 317 a.a., aliphatic sulfonate ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 323 a.a., ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

 Score =  199 bits (507), Expect = 6e-56
 Identities = 120/313 (38%), Positives = 167/313 (53%), Gaps = 2/313 (0%)

Query: 2   PAITRRALSAGLIAAVALSVLPFAAQAAEE-LKIGYQKTGLPVIARQQGVIEKALEAKGV 60
           P   RR L  GL A    S  P    AA++ L+IGYQK     I +  G +E+AL+ +G 
Sbjct: 6   PRHKRRLLLQGLAAGALASGTPLVRAAADKVLRIGYQKFNTLNILKGSGKLEQALQPQGW 65

Query: 61  KVSWVEFTAGPPLVEALNVGSINVGWTGDAPPIFGQAAGSAIVYVAALPSNGKGEAIFTK 120
            V W EF AGP L EALN  +I++G   D P +F  A+G   VY+ A     KG  IF  
Sbjct: 66  SVKWFEFAAGPQLTEALNANAIDLGHAADTPSVFANASGVNAVYLGAEQPYPKGIGIFVA 125

Query: 121 PESGIKSVADLKGKKVGVGKGTSAHNLLVAALEKNGLKLSDIDVTYL-SPADAAAAFASD 179
            ES I+SVADLKGKKV  G+G +   LL+ ALE+ GL   DI+  Y+ + AD  AAF S 
Sbjct: 126 QESPIRSVADLKGKKVATGRGWNVQFLLLKALEEVGLSYRDIEPVYVTNAADVRAAFQSG 185

Query: 180 KIDAWAVWDPFYAIAETRYKPVTLARTSDVLDVKTYFLANRDYAKSHADTINTNVGALGE 239
            +DA  +WDPF A  E   +P  L   + + + +T+ LA   +   H D + T    L +
Sbjct: 186 NVDAATLWDPFLAGQELATRPRILRDGTGLSNNRTFHLAVPSFVDRHKDIVRTVFAELKK 245

Query: 240 AAKWSAANRDKVAAALHEVTGVPLEAQTLAANRSEFGITRIDDKIVASQQETADRFYRLG 299
             +W+ ++  + A  L    GV  +   LA  R  +    +D  IVA QQ+ AD F +LG
Sbjct: 246 TNQWTQSHPQETAELLAPQLGVDPKVLRLATERRNYTTVAVDAGIVAEQQQIADAFLKLG 305

Query: 300 LIPKQISIKDAVW 312
           LI   + ++D V+
Sbjct: 306 LIKNPVRVQDKVY 318